; convert-matrix  -v 1 -i $RSAT/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/local_words_7nt/peak-motifs_local_words-2str-noov_7nt_windgroup50_pssm_count_matrices.txt -from tab -to tab -return counts -return logo -logo_format png,pdf -logo_file $RSAT/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/local_words_7nt/peak-motifs_local_words-2str-noov_7nt_windgroup50_pssm_count_matrices_logo -o $RSAT/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/local_words_7nt/peak-motifs_local_words-2str-noov_7nt_windgroup50_pssm_count_matrices_links.txt
; Input files
;	input	/home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/local_words_7nt/peak-motifs_local_words-2str-noov_7nt_windgroup50_pssm_count_matrices.txt
; Input format        	tab
; Output files
;	output	/home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/local_words_7nt/peak-motifs_local_words-2str-noov_7nt_windgroup50_pssm_count_matrices_links.txt
; Output format       	tab
; pseudo-weight       	1
a	53	36	70	5	143	5	3	14	23	15	40	20	22	116	154	129	8	6	39	46	38
c	28	40	24	139	4	1	1	11	97	108	41	10	8	9	1	1	4	10	24	39	39
g	35	40	22	8	8	2	1	11	7	0	29	100	84	20	1	25	4	137	24	36	33
t	43	43	43	7	4	151	154	123	32	36	49	29	45	14	3	4	143	6	72	38	49
//
; logo file:/home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/local_words_7nt//peak-motifs_local_words-2str-noov_7nt_windgroup50_pssm_count_matrices_logo_m1.png
; logo file:/home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/local_words_7nt//peak-motifs_local_words-2str-noov_7nt_windgroup50_pssm_count_matrices_logo_m1.pdf
; logo file:/home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/local_words_7nt//peak-motifs_local_words-2str-noov_7nt_windgroup50_pssm_count_matrices_logo_m1_rc.png
; logo file:/home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/local_words_7nt//peak-motifs_local_words-2str-noov_7nt_windgroup50_pssm_count_matrices_logo_m1_rc.pdf
a	36	33	74	5	114	3	2	4	15	15	17	19	18	83	81	91	9	4	30	39	34
c	28	23	15	105	4	2	1	2	70	62	41	21	3	10	11	7	4	6	16	28	24
g	30	26	14	8	3	3	0	0	10	5	34	69	50	21	19	5	2	111	10	27	25
t	31	43	22	7	4	117	122	119	30	43	33	16	54	11	14	22	110	4	69	31	42
//
; logo file:/home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/local_words_7nt//peak-motifs_local_words-2str-noov_7nt_windgroup50_pssm_count_matrices_logo_m2.png
; logo file:/home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/local_words_7nt//peak-motifs_local_words-2str-noov_7nt_windgroup50_pssm_count_matrices_logo_m2.pdf
; logo file:/home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/local_words_7nt//peak-motifs_local_words-2str-noov_7nt_windgroup50_pssm_count_matrices_logo_m2_rc.png
; logo file:/home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/local_words_7nt//peak-motifs_local_words-2str-noov_7nt_windgroup50_pssm_count_matrices_logo_m2_rc.pdf
a	38	43	81	8	142	9	3	13	24	22	40	68	25	103	157	154	13	10	36	48	40
c	26	35	15	136	4	5	3	5	85	112	75	13	7	11	0	3	9	11	17	40	36
g	43	41	27	6	6	8	0	10	8	0	10	65	96	34	2	1	9	127	21	37	32
t	53	41	37	10	8	138	154	132	43	26	35	14	32	12	1	2	129	12	86	35	52
//
; logo file:/home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/local_words_7nt//peak-motifs_local_words-2str-noov_7nt_windgroup50_pssm_count_matrices_logo_m3.png
; logo file:/home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/local_words_7nt//peak-motifs_local_words-2str-noov_7nt_windgroup50_pssm_count_matrices_logo_m3.pdf
; logo file:/home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/local_words_7nt//peak-motifs_local_words-2str-noov_7nt_windgroup50_pssm_count_matrices_logo_m3_rc.png
; logo file:/home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/local_words_7nt//peak-motifs_local_words-2str-noov_7nt_windgroup50_pssm_count_matrices_logo_m3_rc.pdf
; Host name	rsat
; Job started	2013-01-11.111024
; Job done	2013-01-11.111027
; Seconds	0.17
;	user	0.17
;	system	0.01
;	cuser	2.05
;	csystem	0.1
