; convert-matrix  -v 1 -i $RSAT/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50_pssm_count_matrices.txt -from tab -to tab -return counts -return logo -logo_format png,pdf -logo_file $RSAT/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50_pssm_count_matrices_logo -o $RSAT/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50_pssm_count_matrices_links.txt
; Input files
;	input	/home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50_pssm_count_matrices.txt
; Input format        	tab
; Output files
;	output	/home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50_pssm_count_matrices_links.txt
; Output format       	tab
; pseudo-weight       	1
a	124	107	52	35	289	18	1	4	77	11	153	80	33	472	477	287	85	17	330	114	138
c	117	138	39	167	31	113	2	28	401	442	92	2	4	8	3	30	87	196	57	143	117
g	112	148	53	247	137	19	2	6	2	3	97	395	400	2	2	105	23	244	51	131	113
t	131	91	340	35	27	334	479	446	4	28	142	7	47	2	2	62	289	27	46	96	116
//
; logo file:/home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/positions_7nt//peak-motifs_positions-2str-noov_7nt_ci50_pssm_count_matrices_logo_m1.png
; logo file:/home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/positions_7nt//peak-motifs_positions-2str-noov_7nt_ci50_pssm_count_matrices_logo_m1.pdf
; logo file:/home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/positions_7nt//peak-motifs_positions-2str-noov_7nt_ci50_pssm_count_matrices_logo_m1_rc.png
; logo file:/home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/positions_7nt//peak-motifs_positions-2str-noov_7nt_ci50_pssm_count_matrices_logo_m1_rc.pdf
a	66	48	25	10	127	13	2	1	10	7	49	122	1	210	255	230	20	7	187	63	71
c	57	72	23	129	41	56	3	0	200	226	143	4	1	4	1	12	24	102	22	72	57
g	68	77	23	105	47	15	1	2	3	2	7	132	241	46	4	8	17	137	29	73	68
t	69	63	189	16	45	176	254	257	47	25	61	2	17	0	0	10	199	14	22	52	64
//
; logo file:/home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/positions_7nt//peak-motifs_positions-2str-noov_7nt_ci50_pssm_count_matrices_logo_m2.png
; logo file:/home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/positions_7nt//peak-motifs_positions-2str-noov_7nt_ci50_pssm_count_matrices_logo_m2.pdf
; logo file:/home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/positions_7nt//peak-motifs_positions-2str-noov_7nt_ci50_pssm_count_matrices_logo_m2_rc.png
; logo file:/home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/positions_7nt//peak-motifs_positions-2str-noov_7nt_ci50_pssm_count_matrices_logo_m2_rc.pdf
a	225	433	191	3	3	105	1	380	30	39	1231	1228	634	142	240	404
c	372	246	86	4	3	1125	892	153	7	2	2	3	44	216	326	279
g	375	329	66	7	2	3	1	306	1196	1157	1	2	411	156	453	317
t	265	229	894	1223	1229	4	343	398	4	39	3	4	148	723	218	237
//
; logo file:/home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/positions_7nt//peak-motifs_positions-2str-noov_7nt_ci50_pssm_count_matrices_logo_m3.png
; logo file:/home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/positions_7nt//peak-motifs_positions-2str-noov_7nt_ci50_pssm_count_matrices_logo_m3.pdf
; logo file:/home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/positions_7nt//peak-motifs_positions-2str-noov_7nt_ci50_pssm_count_matrices_logo_m3_rc.png
; logo file:/home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/positions_7nt//peak-motifs_positions-2str-noov_7nt_ci50_pssm_count_matrices_logo_m3_rc.pdf
; Host name	rsat
; Job started	2013-01-11.110812
; Job done	2013-01-11.110814
; Seconds	0.21
;	user	0.21
;	system	0.01
;	cuser	2.32
;	csystem	0.13
