; convert-matrix  -v 1 -i $RSAT/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/oligos_7nt_mkv4/peak-motifs_oligos-2str-noov_7nt_mkv4_pssm_count_matrices.txt -from tab -to tab -return counts -return logo -logo_format png,pdf -logo_file $RSAT/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/oligos_7nt_mkv4/peak-motifs_oligos-2str-noov_7nt_mkv4_pssm_count_matrices_logo -o $RSAT/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/oligos_7nt_mkv4/peak-motifs_oligos-2str-noov_7nt_mkv4_pssm_count_matrices_links.txt
; Input files
;	input	/home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/oligos_7nt_mkv4/peak-motifs_oligos-2str-noov_7nt_mkv4_pssm_count_matrices.txt
; Input format        	tab
; Output files
;	output	/home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/oligos_7nt_mkv4/peak-motifs_oligos-2str-noov_7nt_mkv4_pssm_count_matrices_links.txt
; Output format       	tab
; pseudo-weight       	1
a	237	426	84	1	1	178	0	456	265	0	1319	1318	550	257
c	455	268	57	1	40	1142	1320	266	1	0	0	2	202	358
g	349	370	74	0	0	0	0	176	1054	1138	0	0	315	228
t	279	256	1105	1318	1279	0	0	422	0	182	1	0	253	477
//
; logo file:/home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/oligos_7nt_mkv4//peak-motifs_oligos-2str-noov_7nt_mkv4_pssm_count_matrices_logo_m1.png
; logo file:/home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/oligos_7nt_mkv4//peak-motifs_oligos-2str-noov_7nt_mkv4_pssm_count_matrices_logo_m1.pdf
; logo file:/home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/oligos_7nt_mkv4//peak-motifs_oligos-2str-noov_7nt_mkv4_pssm_count_matrices_logo_m1_rc.png
; logo file:/home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/oligos_7nt_mkv4//peak-motifs_oligos-2str-noov_7nt_mkv4_pssm_count_matrices_logo_m1_rc.pdf
a	169	181	354	0	0	602	45	0	87	602	16	139	146
c	139	111	41	0	0	1	263	0	516	0	63	133	174
g	162	146	192	0	603	0	243	1	0	1	41	148	115
t	133	165	16	603	0	0	52	602	0	0	483	183	168
//
; logo file:/home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/oligos_7nt_mkv4//peak-motifs_oligos-2str-noov_7nt_mkv4_pssm_count_matrices_logo_m2.png
; logo file:/home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/oligos_7nt_mkv4//peak-motifs_oligos-2str-noov_7nt_mkv4_pssm_count_matrices_logo_m2.pdf
; logo file:/home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/oligos_7nt_mkv4//peak-motifs_oligos-2str-noov_7nt_mkv4_pssm_count_matrices_logo_m2_rc.png
; logo file:/home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/oligos_7nt_mkv4//peak-motifs_oligos-2str-noov_7nt_mkv4_pssm_count_matrices_logo_m2_rc.pdf
a	381	217	0	4	8	1	597	450	1	1213	1217	492	233
c	271	347	0	0	1168	1214	612	1	0	3	2	185	354
g	337	158	3	1	0	4	10	768	1195	0	0	333	244
t	230	497	1216	1214	43	0	0	0	23	3	0	209	388
//
; logo file:/home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/oligos_7nt_mkv4//peak-motifs_oligos-2str-noov_7nt_mkv4_pssm_count_matrices_logo_m3.png
; logo file:/home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/oligos_7nt_mkv4//peak-motifs_oligos-2str-noov_7nt_mkv4_pssm_count_matrices_logo_m3.pdf
; logo file:/home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/oligos_7nt_mkv4//peak-motifs_oligos-2str-noov_7nt_mkv4_pssm_count_matrices_logo_m3_rc.png
; logo file:/home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/oligos_7nt_mkv4//peak-motifs_oligos-2str-noov_7nt_mkv4_pssm_count_matrices_logo_m3_rc.pdf
; Host name	rsat
; Job started	2013-01-11.110737
; Job done	2013-01-11.110739
; Seconds	0.22
;	user	0.22
;	system	0.03
;	cuser	2.32
;	csystem	0.11
