EPD Home page
Eukaryotic Promoter Database / Release 75
Classification
* 1. Plant promoters *
* 1.1. Chromosomal genes *
* 1.1.1. Small nuclear RNAs *
* 1.1.2. Structural proteins *
* 1.1.2.1. Histones *
* 1.1.2.2. Ribosomal proteins and translation elongation factors *
* 1.1.2.3. Tubulins *
* 1.1.2.4. Cell wall proteins *
* 1.1.2.4.1. Hydroxyproline-rich cell wall glycoproteins *
* 1.1.2.4.2. Glycine-rich cell wall proteins *
* 1.1.3. Storage and transport proteins, apoproteins *
* 1.1.3.1. Monocot seed storage proteins *
* 1.1.3.2. Dicot seed storage proteins *
* 1.1.3.3. Light-harvesting complex *
* 1.1.3.4. Photosynthetic electron transport *
* 1.1.3.5. Leghemoglobin *
* 1.1.3.6. Transmembrane transport proteins *
* 1.1.4. Enzymes *
* 1.1.4.1. Nucleotide metabolism *
* 1.1.4.2. Amino acid metabolosm *
* 1.1.4.3. Carbohydrate metabolism *
* 1.1.4.3.1. Ribulose-1,5-biphosphate carboxylase small subunits *
* 1.1.4.3.2. Ribulose-1,5-biphosphate carboxylase activase *
* 1.1.4.3.3. Miscellaneous *
* 1.1.4.4. Lipid metabolism *
* 1.1.4.5. Electron transport, ATP synthesis *
* 1.1.4.6. Ethylene synthesis *
* 1.1.4.7. Secondary plant product metabolism *
* 1.1.4.8. Proteases *
* 1.1.4.9. Polysaccharide degradation *
* 1.1.4.10. Alcohol dehydrogenase *
* 1.1.4.11. Nitrate assimilation *
* 1.1.5. Regulatory proteins *
* 1.1.5.1. DNA-binding proteins *
* 1.1.5.2. Miscellaneous *
* 1.1.6. Proteins related to stress or pathogen defense *
* 1.1.6.1. Heatshock proteins *
* 1.1.6.2. Protease inhibitors *
* 1.1.6.3. Miscellaneous *
* 1.1.7. Unclassified *
* 1.1.7.1. Lectins *
* 1.1.7.2. Nodulins *
* 1.1.7.3. Genes defined by regulatory properties *
* 1.1.7.4. Miscellaneous *
* 1.2. Prokaryotic plasmid DNA *
* 1.2.1. Enzymes *
* 1.2.2. Unclassified *
* 1.3. Viral genes *
* 1.3.1. Geminiviruses *
* 1.3.2. Cauliflower mosaic virus *
* 2. Nematode promoters *
* 2.1. Chromosomal genes *
* 2.1.1. Structural proteins *
* 2.1.1.1. Histones *
* 2.1.1.2. Major sperm proteins (MSP's) *
* 2.1.2. Storage and transport proteins, apoproteins *
* 2.1.2.1. Vitellogenins *
* 2.1.3. Hormones, growth factors, regulatory proteins *
* 2.1.3.1. Calmodulin *
* 2.1.4. Proteins related to stress or pathogen defense *
* 2.1.4.1. Heatshock proteins *
* 3. Arthropode promoters *
* 3.1. Chromosomal genes *
* 3.1.1. Small nuclear RNAs *
* 3.1.2. Structural proteins *
* 3.1.2.1. Histones *
* 3.1.2.2. Ribosomal proteins and translation elongation factors *
* 3.1.2.3. Contractile proteins *
* 3.1.2.3.1. Actin *
* 3.1.2.3.2. Tropomyosin *
* 3.1.2.4. Cuticle proteins *
* 3.1.2.5. Salivary gland glue proteins *
* 3.1.2.6. Silk proteins *
* 3.1.2.7. Chorion proteins *
* 3.1.2.8. Specialized cell-adhesion proteins *
* 3.1.3. Storage and transport proteins, apoproteins *
* 3.1.3.1. Yolk proteins *
* 3.1.3.2. Globin *
* 3.1.4. Enzymes *
* 3.1.4.1. Polymerases *
* 3.1.4.2. Nucleotide metabolism *
* 3.1.4.3. Glycolysis *
* 3.1.4.4. Alcohol dehydrogenase *
* 3.1.4.5. Miscellaneous *
* 3.1.4.6. Protein kinases *
* 3.1.5. Hormones, growth factors, regulatory proteins *
* 3.1.5.1. Hormones and hormone-like peptides *
* 3.1.5.2. Calmodulin *
* 3.1.5.3. Morphogenetic genes *
* 3.1.5.3.1. Segmentation genes *
* 3.1.5.3.2. Homeotic genes *
* 3.1.5.3.3. Neurogenic loci *
* 3.1.5.4. Photoreceptors *
* 3.1.5.5. Cellular oncogene homologues *
* 3.1.5.6. Miscellaneous *
* 3.1.6. Proteins related to stress or pathogen defense *
* 3.1.6.1. Metallothioneins *
* 3.1.6.2. Heatshock proteins *
* 3.1.7. Unclassified *
* 3.1.7.1. Larval serum proteins *
* 3.1.7.2. Miscellaneous *
* 3.2. Transposable elements and retroviruses *
* 3.2.1. Long terminal repeats *
* 3.3. Viral genes *
* 3.3.1. Nuclear polyhedrosis viruses (early genes only) *
* 4. Mollusc promoters *
* 4.1. Chromosomal genes *
* 4.1.1. Hormones, growth factors, regulatory proteins *
* 5. Echinoderm promoters *
* 5.1. Chromosomal genes *
* 5.1.1. Small nuclear RNAs *
* 5.1.2. Structural proteins *
* 5.1.2.1. Histones *
* 5.1.2.1.1. Histone H1 *
* 5.1.2.1.2. Histone H2A *
* 5.1.2.1.3. Histone H2B *
* 5.1.2.1.4. Histone H3 *
* 5.1.2.1.5. Histone H4 *
* 5.1.2.2. Actin *
* 5.1.3. Storage and transport proteins, apoproteins *
* 5.1.3.1. Vitellogenin *
* 5.1.4. Enzymes *
* 5.1.5. Proteins related to stress or pathogen defense *
* 5.1.5.1. Metallothioneins *
* 5.1.6. Unclassified *
* 5.1.6.1. Genes defined by regulatory properties *
* 5.1.6.1.1. Spec1/Spec2 family of calmodulin-related proteins *
* 6. Vertebrate promoters *
* 6.1. Chromosomal genes *
* 6.1.1. Small nuclear RNAs *
* 6.1.1.1. U1 snRNA *
* 6.1.1.2. U2 snRNA *
* 6.1.1.3. U3 snRNA *
* 6.1.1.4. U4 snRNA *
* 6.1.1.5. U5 snRNA *
* 6.1.1.6. U7 snRNA *
* 6.1.2. Structural proteins *
* 6.1.2.1. Histones *
* 6.1.2.1.1. Histone H1/H5 *
* 6.1.2.1.2. Histone H2A *
* 6.1.2.1.3. Histone H2B *
* 6.1.2.1.4. Histone H3 *
* 6.1.2.1.5. Histone H4 *
* 6.1.2.2. Non-histone DNA-binding proteins *
* 6.1.2.2.1. High mobility group chromosomal proteins *
* 6.1.2.2.2. Transition proteins *
* 6.1.2.2.3. Protamines *
* 6.1.2.2.4. Transcription factors *
* 6.1.2.3. RNA-binding proteins *
* 6.1.2.3.1. Nuclear RNA-binding proteins *
* 6.1.2.3.2. Ribosomal proteins *
* 6.1.2.4. Tubulins *
* 6.1.2.5. Contractile proteins *
* 6.1.2.5.1. Actin *
* 6.1.2.5.2. Myosin *
* 6.1.2.5.3. Tropomyosin *
* 6.1.2.5.4. Troponin *
* 6.1.2.6. Intermediate filaments *
* 6.1.2.7. Collagens *
* 6.1.2.8. Extracellular glycoproteins *
* 6.1.2.9. Crystallins *
* 6.1.2.10. Fibrinogens *
* 6.1.2.11. Miscellaneous *
* 6.1.3. Storage and transport proteins, apoproteins *
* 6.1.3.1. Ovalbumin and related proteins *
* 6.1.3.2. Vitellogenins *
* 6.1.3.3. Apolipoproteins *
* 6.1.3.4. Various serum proteins *
* 6.1.3.5. Milk proteins *
* 6.1.3.6. Lipocalin family *
* 6.1.3.7. Cytosolic fatty-acid binding proteins *
* 6.1.3.8. Steroid-binding proteins *
* 6.1.3.9. Ferritin *
* 6.1.3.10. Globins *
* 6.1.3.10.1. Myoglobin *
* 6.1.3.10.2. Alpha-like hemoglobins *
* 6.1.3.10.3. Beta-like hemoglobins *
* 6.1.3.11. Transmembrane transport proteins *
* 6.1.3.12. Electron transport *
* 6.1.3.13. Miscellaneous *
* 6.1.4. Enzymes *
* 6.1.4.1. Polymerases *
* 6.1.4.2. Nucleotide metabolism *
* 6.1.4.3. Amino acid metabolism *
* 6.1.4.3.1. Urea cycle and associated enzymes *
* 6.1.4.3.2. Miscellaneous *
* 6.1.4.4. Vitamin, steroid, porphyrin metabolism *
* 6.1.4.5. Glycogen metabolism *
* 6.1.4.5.1. Glyconeogenesis *
* 6.1.4.5.2. Glyconeogenesis and glycolysis *
* 6.1.4.5.3. Glycolysis *
* 6.1.4.5.4. Citric acid cycle *
* 6.1.4.5.5. Pentose phosphate pathway *
* 6.1.4.6. Lipid metabolism *
* 6.1.4.7. Proteases *
* 6.1.4.7.1. Serine proteases *
* 6.1.4.7.2. Aspartyl proteases *
* 6.1.4.7.3. Metalloproteases *
* 6.1.4.8. Polysaccharide degradation *
* 6.1.4.9. Detoxification *
* 6.1.4.9.1. Cytochromes P450 *
* 6.1.4.9.2. Miscellaneous *
* 6.1.4.10. Miscellaneous *
* 6.1.5. Hormones, growth factors, regulatory proteins *
* 6.1.5.1. Neuroendocrine peptide precursers *
* 6.1.5.2. Glucagon and pancreatic polypeptide *
* 6.1.5.3. Pituitary and placental hormones *
* 6.1.5.3.1. Glycoprotein hormones *
* 6.1.5.3.2. Prolactin-growth hormone family *
* 6.1.5.4. Thyroid and parathytroid hormones *
* 6.1.5.5. Insulin, insulin-like growth factors *
* 6.1.5.6. Gastrointestinal peptides *
* 6.1.5.7. Various vasoactive peptides *
* 6.1.5.8. Interferons *
* 6.1.5.9. Interleukins, colony stimulating factors *
* 6.1.5.10. Various growth factors *
* 6.1.5.11. Tumor necrosis factors *
* 6.1.5.12. Calmodulin and other calcium-binding proteins *
* 6.1.5.13. Protein-tyrosine kinases *
* 6.1.5.14. Transmembrane receptor proteins *
* 6.1.5.14.1. Rhodopsin-like G protein-coupled receptors *
* 6.1.5.14.2. Cytokine receptors *
* 6.1.5.14.3. Miscellaneous *
* 6.1.5.15. Steroid receptors *
* 6.1.5.16. Various cellular protooncogenes *
* 6.1.5.17. Regulatory transcription factors *
* 6.1.5.18. Miscellaneous *
* 6.1.6. Proteins related to stress or pathogen defense *
* 6.1.6.1. Metallothioneins *
* 6.1.6.2. Heatshock proteins (including constitutive homologues) *
* 6.1.6.3. Protease inhibitors *
* 6.1.6.4. Pulmonary surfactant proteins *
* 6.1.6.5. Immunoglobulin Superfamily *
* 6.1.6.5.1. Immunoglobulins *
* 6.1.6.5.1.1. Immunoglobulin heavy chains *
* 6.1.6.5.1.2. Immunoglobulin light kappa chains *
* 6.1.6.5.1.3. Immunoglobulin light lambda chains *
* 6.1.6.5.2. T-cell antigen receptors *
* 6.1.6.5.3. Histocompatibility antigens *
* 6.1.6.5.3.1. Class I antigens *
* 6.1.6.5.3.2. Class II antigens *
* 6.1.6.5.4. T-cell differentiation antigens *
* 6.1.6.5.5. CEA family *
* 6.1.6.5.6. Other immunoglobulin-related proteins *
* 6.1.6.6. Complement and complement regulatory proteins *
* 6.1.7. Unclassified *
* 6.1.7.1. Proteins of unknown or unclassified function *
* 6.1.7.2. Genes defined by regulatory properties *
* 6.1.7.3. Genes identified by location to other genes *
* 6.1.7.4. Miscellaneous *
* 6.2. Transposable elements and retroviruses *
* 6.2.1. Long terminal repeats *
* 6.2.1.1. Retrovirus-like repetitive elements *
* 6.2.1.2. Mammalian oncoviruses *
* 6.2.1.3. Avian oncoviruses *
* 6.2.1.4. Lentiviruses *
* 6.3. Viral genes *
* 6.3.1. Herpes viruses (not EBV) *
* 6.3.1.1. Immediate early (alpha) *
* 6.3.1.2. Delayed early (beta) *
* 6.3.1.3. Intermediate-late (beta/gamma, gamma-1) *
* 6.3.1.4. Late (gamma, gamma-2) *
* 6.3.1.5. Temporal regulation unknown *
* 6.3.2. Epstein-Barr virus and other g'-Herpesviruses *
* 6.3.2.1. lytic *
* 6.3.2.2. latent *
* 6.3.3. Adenoviruses *
* 6.3.3.1. Immediate early *
* 6.3.3.2. Delayed early *
* 6.3.3.3. Intermediate *
* 6.3.3.4. Late *
* 6.3.4. Papilloma viruses *
* 6.3.5. Parvoviruses *
* 6.3.5.1. Adeno-associated virus *
* 6.3.5.2. Murine H-1 parvovirus *
* 6.3.5.3. Human B19 parvovirus *
* 6.3.6. Papovaviruses (not papilloma) *
* 6.3.6.1. Early region / T-antigen *
* 6.3.6.2. Late region / envelope proteins *
* 6.3.7. Hepadnaviruses *
EPD Home page