ID   NF1_1_00001     standard; DNA; UNC; 966 BP.
XX
AC   NF1_1_00001
XX
DT   2-Jun-2005
XX
DE   Sequence of SELEX/SAGE Clone :NF1_1_00001  of cycle 1
XX
KW   HTP SELEX/SAGE, invitro transcription factor binding sites
XX
OS   unidentified
OC   unidentified
XX
RN   [1]
RC   This Contig sequence is obtained by assembly of forward and reverse
RC   sequence of the clone NF1_1_00001 of SELEX cycle 1. Duplicate Clones
RC   containing the same set of binding sites are labelled as colony B of the
RC   same clone.
RA   Emmanuelle Roulet, Stephane Busso, Anamaria A.Camargo, Andrew J.G Simpson,
RA   Nicolas Mermod, and Philipp Bucher.
RT   High-throughput SELEX-SAGE method for quantitative modelling of
RT   transcription-factor binding sites.
RL   Nature Biotechnology 20:831-835(2000)
XX
DR   TRACES; NF1_1_103e11.r1; NF1_1_103e11.f1;
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..966
FT                   /mol_type="unassigned DNA"
FT                   /organism="unidentified"
FT                   /tissue_type="SELEX"
FT                   /note=Contig sequence of colony/colonies NF1_1_00001_A
FT   misc_binding   153..185
FT                  /bound_moiety ="CTF/NF1"
FT                  /label="NF1_1_00001_1"
FT                  /note="Base quality score is 2.1735e-01"
FT   misc_binding   185..218
FT                  /bound_moiety ="CTF/NF1"
FT                  /label="NF1_1_00001_2"
FT                  /note="Base quality score is 1.5214e-02"
FT   misc_binding   218..251
FT                  /bound_moiety ="CTF/NF1"
FT                  /label="NF1_1_00001_3"
FT                  /note="Base quality score is 4.8999e-04"
FT   misc_binding   251..284
FT                  /bound_moiety ="CTF/NF1"
FT                  /label="NF1_1_00001_4"
FT                  /note="Base quality score is 5.1788e-07"
FT   misc_binding   284..317
FT                  /bound_moiety ="CTF/NF1"
FT                  /label="NF1_1_00001_5"
FT                  /note="Base quality score is 7.2622e-07"
FT   misc_binding   317..350
FT                  /bound_moiety ="CTF/NF1"
FT                  /label="NF1_1_00001_6"
FT                  /note="Base quality score is 1.9742e-05"
FT   misc_binding   350..383
FT                  /bound_moiety ="CTF/NF1"
FT                  /label="NF1_1_00001_7"
FT                  /note="Base quality score is 1.1852e-05"
FT   misc_binding   383..415
FT                  /bound_moiety ="CTF/NF1"
FT                  /label="NF1_1_00001_8"
FT                  /note="Base quality score is 5.0441e-08"
FT   misc_binding   415..448
FT                  /bound_moiety ="CTF/NF1"
FT                  /label="NF1_1_00001_9"
FT                  /note="Base quality score is 4.3295e-04"
FT   misc_binding   448..481
FT                  /bound_moiety ="CTF/NF1"
FT                  /label="NF1_1_00001_10"
FT                  /note="Base quality score is 1.6928e-06"
FT   misc_binding   481..514
FT                  /bound_moiety ="CTF/NF1"
FT                  /label="NF1_1_00001_11"
FT                  /note="Base quality score is 1.6658e-06"
FT   misc_binding   514..547
FT                  /bound_moiety ="CTF/NF1"
FT                  /label="NF1_1_00001_12"
FT                  /note="Base quality score is 2.9672e-06"
FT   misc_binding   547..580
FT                  /bound_moiety ="CTF/NF1"
FT                  /label="NF1_1_00001_13"
FT                  /note="Base quality score is 7.4328e-06"
FT   misc_binding   580..613
FT                  /bound_moiety ="CTF/NF1"
FT                  /label="NF1_1_00001_14"
FT                  /note="Base quality score is 5.4740e-05"
FT   misc_binding   613..646
FT                  /bound_moiety ="CTF/NF1"
FT                  /label="NF1_1_00001_15"
FT                  /note="Base quality score is 1.5129e-06"
FT   misc_binding   646..679
FT                  /bound_moiety ="CTF/NF1"
FT                  /label="NF1_1_00001_16"
FT                  /note="Base quality score is 1.6152e-05"
XX
SQ   Sequence 966 BP;    271 A; 226 C; 240 G; 229 T; 0 other;
GCGCGCGCGC TTCACTAGCG TCCGCTCTAT GTTTGTGAAT GGTGCCGGAT ACAATTCACC
ACAGAGACAG CTATGACCAT GATTACGCCA AGCTATTTAG GTGACACCTA TAGAATACTC
AAGCTATGCA TCAAGCTTGG TACCGAGCTC GAATCTAAGA TAGGGAGATT AGTTCGTCAA
ATAGATCTAG TAAGCCGGTG CAGGGAAGGC CCGTTAGATC TATTAGCGCT ATAGGAGTTT
CGTTGGGTAG ATCTAAAGAA ATACGTTTCC TGATGAGTCT TAGATCTACA GTGATGCGCT
GGGGGATTTA AATTAGATCT AGCCAGTTGT GGGACGTACA ATGTTATAGA TCTACTACAA
CGCTCAAGCC CACTGAACCT AGATCTATGG CGTGTAATTG TACGCCCCGA TTAGATCTAA
CCGGAGGGCC CTGGTTGAGT TAGGTAGATC TACGTAGGCA ACGTGCACAA ACCCCTTTAG
ATCTAGCTAG CGAGTGGCAT TGAATCTATA TAGATCTAAC CCAAGCATAA CGGCTCACTA
TCCTAGATCT AGGCTATGAT AGCCTTCTAG AACGCTTAGA TCTACTCACC AACACCGGGG
CACACCGCCT AGATCTAGTT ACGCCCATGA GGATAACCTA CGTAGATCTA GTGTTGAGGA
GCGGCTTCGA ATGCCTAGAT CCACTAGTAA CGCCCGCCAG TGTGCTGGAA TTCTGCAGAT
ATCCATCACA CTGGCGGGCG CTCGAGCATG CATTTAGAGG GGCCAATTCG ACCTATAGTG
AGTCGTATTA CAATCACTGG GCGTCGTTTA CAAGCCGTGA ATGGGAAACC TGGGTTACCA
ATTATAGCTG TGGAAACCCC TTCGCAGAGA TGAAAGAAAA GGGGGCACAC AGCCTCACAA
ATGCGGGCAA CTCGGGGATA TGGCACAAAA CACAGAGCTT GGGTACAATA CACACGGCGG
ACCACA
//