ID NF1_1_00001 standard; DNA; UNC; 966 BP. XX AC NF1_1_00001 XX DT 2-Jun-2005 XX DE Sequence of SELEX/SAGE Clone :NF1_1_00001 of cycle 1 XX KW HTP SELEX/SAGE, invitro transcription factor binding sites XX OS unidentified OC unidentified XX RN [1] RC This Contig sequence is obtained by assembly of forward and reverse RC sequence of the clone NF1_1_00001 of SELEX cycle 1. Duplicate Clones RC containing the same set of binding sites are labelled as colony B of the RC same clone. RA Emmanuelle Roulet, Stephane Busso, Anamaria A.Camargo, Andrew J.G Simpson, RA Nicolas Mermod, and Philipp Bucher. RT High-throughput SELEX-SAGE method for quantitative modelling of RT transcription-factor binding sites. RL Nature Biotechnology 20:831-835(2000) XX DR TRACES; NF1_1_103e11.r1; NF1_1_103e11.f1; XX FH Key Location/Qualifiers FH FT source 1..966 FT /mol_type="unassigned DNA" FT /organism="unidentified" FT /tissue_type="SELEX" FT /note=Contig sequence of colony/colonies NF1_1_00001_A FT misc_binding 153..185 FT /bound_moiety ="CTF/NF1" FT /label="NF1_1_00001_1" FT /note="Base quality score is 2.1735e-01" FT misc_binding 185..218 FT /bound_moiety ="CTF/NF1" FT /label="NF1_1_00001_2" FT /note="Base quality score is 1.5214e-02" FT misc_binding 218..251 FT /bound_moiety ="CTF/NF1" FT /label="NF1_1_00001_3" FT /note="Base quality score is 4.8999e-04" FT misc_binding 251..284 FT /bound_moiety ="CTF/NF1" FT /label="NF1_1_00001_4" FT /note="Base quality score is 5.1788e-07" FT misc_binding 284..317 FT /bound_moiety ="CTF/NF1" FT /label="NF1_1_00001_5" FT /note="Base quality score is 7.2622e-07" FT misc_binding 317..350 FT /bound_moiety ="CTF/NF1" FT /label="NF1_1_00001_6" FT /note="Base quality score is 1.9742e-05" FT misc_binding 350..383 FT /bound_moiety ="CTF/NF1" FT /label="NF1_1_00001_7" FT /note="Base quality score is 1.1852e-05" FT misc_binding 383..415 FT /bound_moiety ="CTF/NF1" FT /label="NF1_1_00001_8" FT /note="Base quality score is 5.0441e-08" FT misc_binding 415..448 FT /bound_moiety ="CTF/NF1" FT /label="NF1_1_00001_9" FT /note="Base quality score is 4.3295e-04" FT misc_binding 448..481 FT /bound_moiety ="CTF/NF1" FT /label="NF1_1_00001_10" FT /note="Base quality score is 1.6928e-06" FT misc_binding 481..514 FT /bound_moiety ="CTF/NF1" FT /label="NF1_1_00001_11" FT /note="Base quality score is 1.6658e-06" FT misc_binding 514..547 FT /bound_moiety ="CTF/NF1" FT /label="NF1_1_00001_12" FT /note="Base quality score is 2.9672e-06" FT misc_binding 547..580 FT /bound_moiety ="CTF/NF1" FT /label="NF1_1_00001_13" FT /note="Base quality score is 7.4328e-06" FT misc_binding 580..613 FT /bound_moiety ="CTF/NF1" FT /label="NF1_1_00001_14" FT /note="Base quality score is 5.4740e-05" FT misc_binding 613..646 FT /bound_moiety ="CTF/NF1" FT /label="NF1_1_00001_15" FT /note="Base quality score is 1.5129e-06" FT misc_binding 646..679 FT /bound_moiety ="CTF/NF1" FT /label="NF1_1_00001_16" FT /note="Base quality score is 1.6152e-05" XX SQ Sequence 966 BP; 271 A; 226 C; 240 G; 229 T; 0 other; GCGCGCGCGC TTCACTAGCG TCCGCTCTAT GTTTGTGAAT GGTGCCGGAT ACAATTCACC ACAGAGACAG CTATGACCAT GATTACGCCA AGCTATTTAG GTGACACCTA TAGAATACTC AAGCTATGCA TCAAGCTTGG TACCGAGCTC GAATCTAAGA TAGGGAGATT AGTTCGTCAA ATAGATCTAG TAAGCCGGTG CAGGGAAGGC CCGTTAGATC TATTAGCGCT ATAGGAGTTT CGTTGGGTAG ATCTAAAGAA ATACGTTTCC TGATGAGTCT TAGATCTACA GTGATGCGCT GGGGGATTTA AATTAGATCT AGCCAGTTGT GGGACGTACA ATGTTATAGA TCTACTACAA CGCTCAAGCC CACTGAACCT AGATCTATGG CGTGTAATTG TACGCCCCGA TTAGATCTAA CCGGAGGGCC CTGGTTGAGT TAGGTAGATC TACGTAGGCA ACGTGCACAA ACCCCTTTAG ATCTAGCTAG CGAGTGGCAT TGAATCTATA TAGATCTAAC CCAAGCATAA CGGCTCACTA TCCTAGATCT AGGCTATGAT AGCCTTCTAG AACGCTTAGA TCTACTCACC AACACCGGGG CACACCGCCT AGATCTAGTT ACGCCCATGA GGATAACCTA CGTAGATCTA GTGTTGAGGA GCGGCTTCGA ATGCCTAGAT CCACTAGTAA CGCCCGCCAG TGTGCTGGAA TTCTGCAGAT ATCCATCACA CTGGCGGGCG CTCGAGCATG CATTTAGAGG GGCCAATTCG ACCTATAGTG AGTCGTATTA CAATCACTGG GCGTCGTTTA CAAGCCGTGA ATGGGAAACC TGGGTTACCA ATTATAGCTG TGGAAACCCC TTCGCAGAGA TGAAAGAAAA GGGGGCACAC AGCCTCACAA ATGCGGGCAA CTCGGGGATA TGGCACAAAA CACAGAGCTT GGGTACAATA CACACGGCGG ACCACA //