Li 2014, Chromatin maps of WT and mutant seedlings.
Chromatin maps of wild type A. thaliana seedlings
(Col-0) and a double mutant in the AtISWI genes CHROMATIN
REMODELING 11 (CHR11) and CHR17, two chromatin remodelers.
- Raw data was downloaded from: GEO
- Input file format: SRA
- Download date: 09-12-2016
From A. thaliana (Feb 2011 TAIR10/araTha1).
FASTQ files were extracted from SRA files using fastq-dump
toolkit v2.5.0) and mapped to the genome
using Bowtie v0.12.8. SAM
files were then converted into bam
using samtools v0.1.14
and to bed using bamToBed v2.12.0
conversion was carried out using bed2sga.pl
(ChIP-Seq v. 1.5.2).
Li G, Liu S, Wang J, He J, Huang H, Zhang Y, Xu L
ISWI proteins participate in the genome-wide nucleosome distribution in Arabidopsis.
Plant J. 2014 May;78(4):706-14. doi: 10.1111/tpj.12499. Epub 2014 Apr 15.
MNase-seq analysis of Col-0 and chr11-1 chr17-1
Genome browser viewable files
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