ChIP-seq data:
| Filename | Description | Feature | GEO-ID | |
| 1 | ABF1_ABA.sga | Seedling|ABF1|ABA|All | ABF1 | - |
| 2 | GSM2130865.sga | Seedling|ABF1|ABA|rep1 | ABF1 | GSM2130865 |
| 3 | GSM2130867.sga | Seedling|ABF1|ABA|rep2 | ABF1 | GSM2130867 |
| 4 | GSM2130869.sga | Seedling|ABF1|ABA|rep3 | ABF1 | GSM2130869 |
| 5 | ABF1_EtOH.sga | Seedling|ABF1|EtOH|All | ABF1 | - |
| 6 | GSM2130866.sga | Seedling|ABF1|EtOH|rep1 | ABF1 | GSM2130866 |
| 7 | GSM2130868.sga | Seedling|ABF1|EtOH|rep2 | ABF1 | GSM2130868 |
| 8 | GSM2130870.sga | Seedling|ABF1|EtOH|rep3 | ABF1 | GSM2130870 |
| 9 | ABF3_ABA.sga | Seedling|ABF3|ABA|All | ABF3 | - |
| 10 | GSM2130975.sga | Seedling|ABF3|ABA|rep1 | ABF3 | GSM2130975 |
| 11 | GSM2130977.sga | Seedling|ABF3|ABA|rep2 | ABF3 | GSM2130977 |
| 12 | GSM2130979.sga | Seedling|ABF3|ABA|rep3 | ABF3 | GSM2130979 |
| 13 | ABF3_EtOH.sga | Seedling|ABF3|EtOH|All | ABF3 | - |
| 14 | GSM2130976.sga | Seedling|ABF3|EtOH|rep1 | ABF3 | GSM2130976 |
| 15 | GSM2130978.sga | Seedling|ABF3|EtOH|rep2 | ABF3 | GSM2130978 |
| 16 | GSM2130980.sga | Seedling|ABF3|EtOH|rep3 | ABF3 | GSM2130980 |
| 17 | ABF4_ABA.sga | Seedling|ABF4|ABA|All | ABF4 | - |
| 18 | GSM2130969.sga | Seedling|ABF4|ABA|rep1 | ABF4 | GSM2130969 |
| 19 | GSM2130971.sga | Seedling|ABF4|ABA|rep2 | ABF4 | GSM2130971 |
| 20 | GSM2130973.sga | Seedling|ABF4|ABA|rep3 | ABF4 | GSM2130973 |
| 21 | ABF4_EtOH.sga | Seedling|ABF4|EtOH|All | ABF4 | - |
| 22 | GSM2130970.sga | Seedling|ABF4|EtOH|rep1 | ABF4 | GSM2130970 |
| 23 | GSM2130972.sga | Seedling|ABF4|EtOH|rep2 | ABF4 | GSM2130972 |
| 24 | GSM2130974.sga | Seedling|ABF4|EtOH|rep3 | ABF4 | GSM2130974 |
| 25 | ANAC032_ABA.sga | Seedling|ANAC032|ABA|All | ANAC032 | - |
| 26 | GSM2130881.sga | Seedling|ANAC032|ABA|rep1 | ANAC032 | GSM2130881 |
| 27 | GSM2130883.sga | Seedling|ANAC032|ABA|rep2 | ANAC032 | GSM2130883 |
| 28 | GSM2130885.sga | Seedling|ANAC032|ABA|rep3 | ANAC032 | GSM2130885 |
| 29 | ANAC032_EtOH.sga | Seedling|ANAC032|EtOH|All | ANAC032 | - |
| 30 | GSM2130882.sga | Seedling|ANAC032|EtOH|rep1 | ANAC032 | GSM2130882 |
| 31 | GSM2130884.sga | Seedling|ANAC032|EtOH|rep2 | ANAC032 | GSM2130884 |
| 32 | GSM2130886.sga | Seedling|ANAC032|EtOH|rep3 | ANAC032 | GSM2130886 |
| 33 | ANAC102_ABA.sga | Seedling|ANAC102|ABA|All | ANAC102 | - |
| 34 | GSM2130877.sga | Seedling|ANAC102|ABA|rep1 | ANAC102 | GSM2130877 |
| 35 | GSM2130879.sga | Seedling|ANAC102|ABA|rep2 | ANAC102 | GSM2130879 |
| 36 | ANAC102_EtOH.sga | Seedling|ANAC102|EtOH|All | ANAC102 | - |
| 37 | GSM2130878.sga | Seedling|ANAC102|EtOH|rep1 | ANAC102 | GSM2130878 |
| 38 | GSM2130880.sga | Seedling|ANAC102|EtOH|rep2 | ANAC102 | GSM2130880 |
| 39 | AT5G04760_ABA.sga | Seedling|AT5G04760|ABA|All | AT5G04760 | - |
| 40 | GSM2130957.sga | Seedling|AT5G04760|ABA|rep1 | AT5G04760 | GSM2130957 |
| 41 | GSM2130959.sga | Seedling|AT5G04760|ABA|rep2 | AT5G04760 | GSM2130959 |
| 42 | GSM2130961.sga | Seedling|AT5G04760|ABA|rep3 | AT5G04760 | GSM2130961 |
| 43 | AT5G04760_EtOH.sga | Seedling|AT5G04760|EtOH|All | AT5G04760 | - |
| 44 | GSM2130958.sga | Seedling|AT5G04760|EtOH|rep1 | AT5G04760 | GSM2130958 |
| 45 | GSM2130960.sga | Seedling|AT5G04760|EtOH|rep2 | AT5G04760 | GSM2130960 |
| 46 | GSM2130962.sga | Seedling|AT5G04760|EtOH|rep3 | AT5G04760 | GSM2130962 |
| 47 | DREB2A_ABA.sga | Seedling|DREB2A|ABA|All | DREB2A | - |
| 48 | GSM2130917.sga | Seedling|DREB2A|ABA|rep1 | DREB2A | GSM2130917 |
| 49 | GSM2130919.sga | Seedling|DREB2A|ABA|rep2 | DREB2A | GSM2130919 |
| 50 | GSM2130921.sga | Seedling|DREB2A|ABA|rep3 | DREB2A | GSM2130921 |
| 51 | DREB2A_EtOH.sga | Seedling|DREB2A|EtOH|All | DREB2A | - |
| 52 | GSM2130918.sga | Seedling|DREB2A|EtOH|rep1 | DREB2A | GSM2130918 |
| 53 | GSM2130920.sga | Seedling|DREB2A|EtOH|rep2 | DREB2A | GSM2130920 |
| 54 | GSM2130922.sga | Seedling|DREB2A|EtOH|rep3 | DREB2A | GSM2130922 |
| 55 | FBH3_ABA.sga | Seedling|FBH3|ABA|All | FBH3 | - |
| 56 | GSM2130905.sga | Seedling|FBH3|ABA|rep1 | FBH3 | GSM2130905 |
| 57 | GSM2130907.sga | Seedling|FBH3|ABA|rep2 | FBH3 | GSM2130907 |
| 58 | GSM2130909.sga | Seedling|FBH3|ABA|rep3 | FBH3 | GSM2130909 |
| 59 | FBH3_EtOH.sga | Seedling|FBH3|EtOH|All | FBH3 | - |
| 60 | GSM2130906.sga | Seedling|FBH3|EtOH|rep1 | FBH3 | GSM2130906 |
| 61 | GSM2130908.sga | Seedling|FBH3|EtOH|rep2 | FBH3 | GSM2130908 |
| 62 | GSM2130910.sga | Seedling|FBH3|EtOH|rep3 | FBH3 | GSM2130910 |
| 63 | GBF2_ABA.sga | Seedling|GBF2|ABA|All | GBF2 | - |
| 64 | GSM2130893.sga | Seedling|GBF2|ABA|rep1 | GBF2 | GSM2130893 |
| 65 | GSM2130895.sga | Seedling|GBF2|ABA|rep2 | GBF2 | GSM2130895 |
| 66 | GSM2130897.sga | Seedling|GBF2|ABA|rep3 | GBF2 | GSM2130897 |
| 67 | GBF2_EtOH.sga | Seedling|GBF2|EtOH|All | GBF2 | - |
| 68 | GSM2130894.sga | Seedling|GBF2|EtOH|rep1 | GBF2 | GSM2130894 |
| 69 | GSM2130896.sga | Seedling|GBF2|EtOH|rep2 | GBF2 | GSM2130896 |
| 70 | GSM2130898.sga | Seedling|GBF2|EtOH|rep3 | GBF2 | GSM2130898 |
| 71 | GBF3_ABA.sga | Seedling|GBF3|ABA|All | GBF3 | - |
| 72 | GSM2130871.sga | Seedling|GBF3|ABA|rep1 | GBF3 | GSM2130871 |
| 73 | GSM2130873.sga | Seedling|GBF3|ABA|rep2 | GBF3 | GSM2130873 |
| 74 | GSM2130875.sga | Seedling|GBF3|ABA|rep3 | GBF3 | GSM2130875 |
| 75 | GBF3_EtOH.sga | Seedling|GBF3|EtOH|All | GBF3 | - |
| 76 | GSM2130872.sga | Seedling|GBF3|EtOH|rep1 | GBF3 | GSM2130872 |
| 77 | GSM2130874.sga | Seedling|GBF3|EtOH|rep2 | GBF3 | GSM2130874 |
| 78 | GSM2130876.sga | Seedling|GBF3|EtOH|rep3 | GBF3 | GSM2130876 |
| 79 | HAT22_ABA.sga | Seedling|HAT22|ABA|All | HAT22 | - |
| 80 | GSM2130899.sga | Seedling|HAT22|ABA|rep1 | HAT22 | GSM2130899 |
| 81 | GSM2130901.sga | Seedling|HAT22|ABA|rep2 | HAT22 | GSM2130901 |
| 82 | GSM2130903.sga | Seedling|HAT22|ABA|rep3 | HAT22 | GSM2130903 |
| 83 | HAT22_EtOH.sga | Seedling|HAT22|EtOH|All | HAT22 | - |
| 84 | GSM2130900.sga | Seedling|HAT22|EtOH|rep1 | HAT22 | GSM2130900 |
| 85 | GSM2130902.sga | Seedling|HAT22|EtOH|rep2 | HAT22 | GSM2130902 |
| 86 | GSM2130904.sga | Seedling|HAT22|EtOH|rep3 | HAT22 | GSM2130904 |
| 87 | HB5_ABA.sga | Seedling|HB5|ABA|All | HB5 | - |
| 88 | GSM2130941.sga | Seedling|HB5|ABA|rep1 | HB5 | GSM2130941 |
| 89 | GSM2130943.sga | Seedling|HB5|ABA|rep2 | HB5 | GSM2130943 |
| 90 | GSM2130945.sga | Seedling|HB5|ABA|rep3 | HB5 | GSM2130945 |
| 91 | HB5_EtOH.sga | Seedling|HB5|EtOH|All | HB5 | - |
| 92 | GSM2130942.sga | Seedling|HB5|EtOH|rep1 | HB5 | GSM2130942 |
| 93 | GSM2130944.sga | Seedling|HB5|EtOH|rep2 | HB5 | GSM2130944 |
| 94 | GSM2130946.sga | Seedling|HB5|EtOH|rep3 | HB5 | GSM2130946 |
| 95 | HB6_ABA.sga | Seedling|HB6|ABA|All | HB6 | - |
| 96 | GSM2130947.sga | Seedling|HB6|ABA|rep1 | HB6 | GSM2130947 |
| 97 | GSM2130949.sga | Seedling|HB6|ABA|rep2 | HB6 | GSM2130949 |
| 98 | GSM2130951.sga | Seedling|HB6|ABA|rep3 | HB6 | GSM2130951 |
| 99 | HB6_EtOH.sga | Seedling|HB6|EtOH|All | HB6 | - |
| 100 | GSM2130948.sga | Seedling|HB6|EtOH|rep1 | HB6 | GSM2130948 |
| 101 | GSM2130950.sga | Seedling|HB6|EtOH|rep2 | HB6 | GSM2130950 |
| 102 | GSM2130952.sga | Seedling|HB6|EtOH|rep3 | HB6 | GSM2130952 |
| 103 | HB7_ABA.sga | Seedling|HB7|ABA|All | HB7 | - |
| 104 | GSM2130963.sga | Seedling|HB7|ABA|rep1 | HB7 | GSM2130963 |
| 105 | GSM2130965.sga | Seedling|HB7|ABA|rep2 | HB7 | GSM2130965 |
| 106 | GSM2130967.sga | Seedling|HB7|ABA|rep3 | HB7 | GSM2130967 |
| 107 | HB7_EtOH.sga | Seedling|HB7|EtOH|All | HB7 | - |
| 108 | GSM2130964.sga | Seedling|HB7|EtOH|rep1 | HB7 | GSM2130964 |
| 109 | GSM2130966.sga | Seedling|HB7|EtOH|rep2 | HB7 | GSM2130966 |
| 110 | GSM2130968.sga | Seedling|HB7|EtOH|rep3 | HB7 | GSM2130968 |
| 111 | HSFA6A_ABA.sga | Seedling|HSFA6A|ABA|All | HSFA6A | - |
| 112 | GSM2130929.sga | Seedling|HSFA6A|ABA|rep1 | HSFA6A | GSM2130929 |
| 113 | GSM2130931.sga | Seedling|HSFA6A|ABA|rep2 | HSFA6A | GSM2130931 |
| 114 | GSM2130933.sga | Seedling|HSFA6A|ABA|rep3 | HSFA6A | GSM2130933 |
| 115 | HSFA6A_EtOH.sga | Seedling|HSFA6A|EtOH|All | HSFA6A | - |
| 116 | GSM2130930.sga | Seedling|HSFA6A|EtOH|rep1 | HSFA6A | GSM2130930 |
| 117 | GSM2130932.sga | Seedling|HSFA6A|EtOH|rep2 | HSFA6A | GSM2130932 |
| 118 | GSM2130934.sga | Seedling|HSFA6A|EtOH|rep3 | HSFA6A | GSM2130934 |
| 119 | MYB3_ABA.sga | Seedling|MYB3|ABA|All | MYB3 | - |
| 120 | GSM2130911.sga | Seedling|MYB3|ABA|rep1 | MYB3 | GSM2130911 |
| 121 | GSM2130913.sga | Seedling|MYB3|ABA|rep2 | MYB3 | GSM2130913 |
| 122 | GSM2130915.sga | Seedling|MYB3|ABA|rep3 | MYB3 | GSM2130915 |
| 123 | MYB3_EtOH.sga | Seedling|MYB3|EtOH|All | MYB3 | - |
| 124 | GSM2130912.sga | Seedling|MYB3|EtOH|rep1 | MYB3 | GSM2130912 |
| 125 | GSM2130914.sga | Seedling|MYB3|EtOH|rep2 | MYB3 | GSM2130914 |
| 126 | GSM2130916.sga | Seedling|MYB3|EtOH|rep3 | MYB3 | GSM2130916 |
| 127 | MYB44_ABA.sga | Seedling|MYB44|ABA|All | MYB44 | - |
| 128 | GSM2130935.sga | Seedling|MYB44|ABA|rep1 | MYB44 | GSM2130935 |
| 129 | GSM2130937.sga | Seedling|MYB44|ABA|rep2 | MYB44 | GSM2130937 |
| 130 | GSM2130939.sga | Seedling|MYB44|ABA|rep3 | MYB44 | GSM2130939 |
| 131 | MYB44_EtOH.sga | Seedling|MYB44|EtOH|All | MYB44 | - |
| 132 | GSM2130936.sga | Seedling|MYB44|EtOH|rep1 | MYB44 | GSM2130936 |
| 133 | GSM2130938.sga | Seedling|MYB44|EtOH|rep2 | MYB44 | GSM2130938 |
| 134 | GSM2130940.sga | Seedling|MYB44|EtOH|rep3 | MYB44 | GSM2130940 |
| 135 | NFYB2_ABA.sga | Seedling|NFYB2|ABA|All | NFYB2 | - |
| 136 | GSM2130859.sga | Seedling|NFYB2|ABA|rep1 | NFYB2 | GSM2130859 |
| 137 | GSM2130861.sga | Seedling|NFYB2|ABA|rep2 | NFYB2 | GSM2130861 |
| 138 | GSM2130863.sga | Seedling|NFYB2|ABA|rep3 | NFYB2 | GSM2130863 |
| 139 | NFYB2_EtOH.sga | Seedling|NFYB2|EtOH|All | NFYB2 | - |
| 140 | GSM2130860.sga | Seedling|NFYB2|EtOH|rep1 | NFYB2 | GSM2130860 |
| 141 | GSM2130862.sga | Seedling|NFYB2|EtOH|rep2 | NFYB2 | GSM2130862 |
| 142 | GSM2130864.sga | Seedling|NFYB2|EtOH|rep3 | NFYB2 | GSM2130864 |
| 143 | NFYC2_ABA.sga | Seedling|NFYC2|ABA|All | NFYC2 | - |
| 144 | GSM2130887.sga | Seedling|NFYC2|ABA|rep1 | NFYC2 | GSM2130887 |
| 145 | GSM2130889.sga | Seedling|NFYC2|ABA|rep2 | NFYC2 | GSM2130889 |
| 146 | GSM2130891.sga | Seedling|NFYC2|ABA|rep3 | NFYC2 | GSM2130891 |
| 147 | NFYC2_EtOH.sga | Seedling|NFYC2|EtOH|All | NFYC2 | - |
| 148 | GSM2130888.sga | Seedling|NFYC2|EtOH|rep1 | NFYC2 | GSM2130888 |
| 149 | GSM2130890.sga | Seedling|NFYC2|EtOH|rep2 | NFYC2 | GSM2130890 |
| 150 | GSM2130892.sga | Seedling|NFYC2|EtOH|rep3 | NFYC2 | GSM2130892 |
| 151 | RD26_ABA.sga | Seedling|RD26|ABA|All | RD26 | - |
| 152 | GSM2130923.sga | Seedling|RD26|ABA|rep1 | RD26 | GSM2130923 |
| 153 | GSM2130925.sga | Seedling|RD26|ABA|rep2 | RD26 | GSM2130925 |
| 154 | GSM2130927.sga | Seedling|RD26|ABA|rep3 | RD26 | GSM2130927 |
| 155 | RD26_EtOH.sga | Seedling|RD26|EtOH|All | RD26 | - |
| 156 | GSM2130924.sga | Seedling|RD26|EtOH|rep1 | RD26 | GSM2130924 |
| 157 | GSM2130926.sga | Seedling|RD26|EtOH|rep2 | RD26 | GSM2130926 |
| 158 | GSM2130928.sga | Seedling|RD26|EtOH|rep3 | RD26 | GSM2130928 |
| 159 | ZAT6_ABA.sga | Seedling|ZAT6|ABA|All | ZAT6 | - |
| 160 | GSM2130953.sga | Seedling|ZAT6|ABA|rep1 | ZAT6 | GSM2130953 |
| 161 | GSM2130955.sga | Seedling|ZAT6|ABA|rep2 | ZAT6 | GSM2130955 |
| 162 | ZAT6_EtOH.sga | Seedling|ZAT6|EtOH|All | ZAT6 | - |
| 163 | GSM2130954.sga | Seedling|ZAT6|EtOH|rep1 | ZAT6 | GSM2130954 |
| 164 | GSM2130956.sga | Seedling|ZAT6|EtOH|rep2 | ZAT6 | GSM2130956 |
| 165 | mockChIP_mock.sga | Seedling|mockChIP|mock|All | mockChIP | - |
| 166 | GSM2130981.sga | Seedling|Control|mock|rep1 | mockChIP | GSM2130981 |
| 167 | GSM2130982.sga | Seedling|Control|mock|rep2 | mockChIP | GSM2130982 |
Replicates from the same TF and treatment have been merged and annotated as 'All'
FASTQ files were extracted from SRA files using fastq-dump (SRA toolkit v2.5.0) and mapped to the genome using Bowtie2 v0.12.8. SAM files were then converted into bam using samtools v0.1.14 and to bed using bamToBed v2.12.0 (bedtools). SGA conversion was carried out using bed2sga.pl (ChIP-Seq v. 1.5.2).