EPDnew, the Human Curated Promoter Database.
The Eukaryotic Promoter Database is an annotated non-redundant
collection of eukaryotic POL II promoters, for which the
transcription start site has been determined
experimentally. Access to promoter sequences is provided by
pointers to positions in nucleotide sequence entries. The
annotation part of an entry includes description of the
initiation site mapping data, cross-references to other
databases, and bibliographic references. EPD is structured in
a way that facilitates dynamic extraction of biologically
meaningful promoter subsets for comparative sequence analysis.
- Data was downloaded from: EPD ftp
- Input file format: SGA, BED, FPS, DAT
- Download date: 03-7-2018
From C. familiaris (Sep 2011 CanFam3.1/canFam3).
Files are automatically generated during the database build
process. More information about the pipeline used can be found
Dreos R, Ambrosini G, Groux R, Cavin Périer R, Bucher P
The eukaryotic promoter database in its 30th year: focus on non-vertebrate organisms.
Nucleic Acids Res. 2017 Jan 4;45(D1):D51-D55. doi: 10.1093/nar/gkw1069. Epub 2016 Nov 28.