Ensembl, TSS and other annotations for known genes.

Genome annotation from Ensembl, restricted to gene features such as transcription start and end sites, exon start sites, intron start site and CDS start sites.

• Raw data was downloaded from: UCSC Table Browser
• Input file format: TXT
• Download date: 25-9-2017

From C. elegans (Oct 2010 WBcel215/ce10).

Genome Annotation:

	Filename	Description	Feature	GEO-ID
1	CeEnsemblTss.sga	Transcript start sites	TSS	-
2	CeEnsemblTes.sga	Transcript end sites	TES	-
3	CeEnsemblCdsStart.sga	CDS start sites	CDS	-
4	CeEnsemblEss.sga	Exon start sites	ESS	-
5	CeEnsemblIss.sga	Intron start sites	ISS	-

All fields from the primary (Ensembl) table were downloaded. Samples were generated from the input TXT file with a custom made awk script.

• Yates A, et al., Ensembl 2016. Nucleic Acids Res. 2016 Jan 4;44(D1):D710-6. Delete this section if none