UCSC, TSS and other annotations for known genes.

Transcription start sites inferred form KnownGenes track from UCSC Genome Browser.

• Raw data was downloaded from: UCSC table browser
• Input file format: GTF
• Download date: 03-2014

From D. rerio (July 2010 Zv9/danRer7).

Genome Annotation:

	Filename	Description	Feature	GEO-ID
1	ucsc_promoter_list.sga	TSS from UCSC known genes	TSS	-
2	ucsc_CDSstart_list.sga	CDS start sites	CDS_start	-
3	ucsc_exonStart_list.sga	Exon start sites	exon_start	-
4	ucsc_intronStart_list.sga	Intron start sites	intron_start	-
5	ucsc_transcriptEnd_list.sga	Transcript end sites	polyA_site	-

Table was downloaded in March 2014.
Genes were retained if annotated as "protein coding" or if they had a protein ID or a refSeq status.