SNP collection from DGRP.

SNPs data from the The Drosophila Genetic Reference Panel (version 2). SNPs with a frequence between 0.05 and 0.95 are referred as common and can be analyzed separately.

• Raw data was downloaded from: DGRP
• Input file format: GFF
• Download date: n/a

From D. melanogaster (Apr 2006 BDGP R5/dm3).

Sequence-derived:

	Filename	Description	Feature	GEO-ID
1	dm_DGRP_SNP.sga	Genomic SNPs	snp	-
2	dm_DGRP_SNP_common.sga	Common SNPs (5%)	snp	-

GFF file was converted in SGA format using in-house scripts.

• Huang W, Massouras A, Inoue Y, Peiffer J, Ràmia M, Tarone AM, Turlapati L, Zichner T, Zhu D, Lyman RF, Magwire MM, Blankenburg K, Carbone MA, Chang K, Ellis LL, Fernandez S, Han Y, Highnam G, Hjelmen CE, Jack JR, Javaid M, Jayaseelan J, Kalra D, Lee S, Lewis L, Munidasa M, Ongeri F, Patel S, Perales L, Perez A, Pu L, Rollmann SM, Ruth R, Saada N, Warner C, Williams A, Wu YQ, Yamamoto A, Zhang Y, Zhu Y, Anholt RR, Korbel JO, Mittelman D, Muzny DM, Gibbs RA, Barbadilla A, Johnston JS, Stone EA, Richards S, Deplancke B, Mackay TF
  Natural variation in genome architecture among 205 Drosophila melanogaster Genetic Reference Panel lines. Genome Res. 2014 Jul;24(7):1193-208. doi: 10.1101/gr.171546.113. Epub 2014 Apr 8. 24714809