Hoskins 2011, Drosophila embryo cap analysis of gene expression (CAGE).


This series contains only the CAGE data from the paper cited below. The RLM-RACE and cap-trapped ESTs are not included.



From D. melanogaster (Apr 2006 BDGP R5/dm3).

Transcription Profiling data:

Filename Description Feature GEO-ID
1 embryo_cage.sga Embryo CAGE TSS -

Technical Notes

SAM files were then converted into bam (only reads with mapping quality scores greater or equal to 30) using samtools v0.1.14 and to bed using bamToBed v2.12.0 (bedtools). SGA conversion was carried out using bed2sga.pl (ChIP-Seq v. 1.5.3).


Last update: 8 Oct 2018