Hoskins 2011, Drosophila embryo cap analysis of gene expression (CAGE).

This series contains only the CAGE data from the paper cited below. The RLM-RACE and cap-trapped ESTs are not included.

• Raw data was downloaded from: Publication supplemental material
• Input file format: SAM
• Download date: n/a

From D. melanogaster (Apr 2006 BDGP R5/dm3).

Transcription Profiling data:

	Filename	Description	Feature	GEO-ID
1	embryo_cage.sga	Embryo CAGE	TSS	-

SAM files were then converted into bam (only reads with mapping quality scores greater or equal to 30) using samtools v0.1.14 and to bed using bamToBed v2.12.0 (bedtools). SGA conversion was carried out using bed2sga.pl (ChIP-Seq v. 1.5.3).

• Hoskins RA, Landolin JM, Brown JB, Sandler JE, Takahashi H, Lassmann T, Yu C, Booth BW, Zhang D, Wan KH, Yang L, Boley N, Andrews J, Kaufman TC, Graveley BR, Bickel PJ, Carninci P, Carlson JW, Celniker SE
  Genome-wide analysis of promoter architecture in Drosophila melanogaster. Genome Res. 2011 Feb;21(2):182-92. doi: 10.1101/gr.112466.110. Epub 2010 Dec 22. 21177961