MachiBase: a Drosophila melanogaster 5\'-end mRNA transcription database.

This series contains transcription start site mapping from MachiBase. The data were generated with the oligo-capping technology.

• Raw data was downloaded from: Machibase
• Input file format: TXT
• Download date: n/a

From D. melanogaster (Apr 2006 BDGP R5/dm3).

Transcription Profiling data:

	Filename	Description	Feature	GEO-ID
1	embryo_oligocap.sga	Embryo oligo-capping	TSS	-
2	larva_oligocap.sga	Larva oligo-capping	TSS	-
3	youngFemale_oligocap.sga	Young female oligo-capping	TSS	-
4	youngMale_oligocap.sga	Young male oligo-capping	TSS	-
5	oldFemale_oligocap.sga	Old female oligo-capping	TSS	-
6	oldMale_oligocap.sga	Old male oligo-capping	TSS	-
7	s2_oligocap.sga	S2 cells oligo-capping	TSS	-
8	all_oligocap.sga	All tissues oligo-capping	TSS	-

According to the readme file included in the tar archive from MachiBase, the 5'end tags were mapped to the Drosophila genome using BLAT as alignment tool allowing for up to three mismatches.

• Saito TL, Yoshimura J, Sasaki S, Ahsan B, Sasaki A, Kuroshu R, Morishita S
  UTGB toolkit for personalized genome browsers. Bioinformatics. 2009 Aug 1;25(15):1856-61. doi: 10.1093/bioinformatics/btp350. Epub 2009 Jun 3. 19497937