Bohla 2014, CTCF/CP190 and ISWI dependent regulation of nucleosome occupancy. LiftOver from dm3.


Changes in chromatin organisation are investigated for two RNAi lines: CTCS (an insulator) and ISWI (a component of the nucleosome remodelling factor NURF). Moreover a luciferase control is also investigated.



From D. melanogaster (Aug 2014 BDGP Rel6 + ISO1 MT/dm6).

ChIP-seq data:

Filename Description Feature GEO-ID
1 GSM1248973.sga H3|ISWI RNAi H3 GSM1248973
2 GSM1248972.sga H3|CTCF CP190 RNAi H3 GSM1248972
3 GSM1248971.sga H3|luciferase RNAi H3 GSM1248971

DNase FAIRE data:

Filename Description Feature GEO-ID
1 GSM1248976.sga MNase|ISWI RNAi MNase GSM1248976
2 GSM1248975.sga MNase|CTCF CP190 RNAi MNase GSM1248975
3 GSM1248974.sga MNase|luciferase RNAi MNase GSM1248974

Technical Notes

Dataset lifted over from dm3.


Last update: 1 Oct 2018