Bonn 2012, Analisys of H3 modifications in mesoderm. LiftOver from dm3.

Description

ChIP-seq against several histone modifications, PolII and Mef2 in mesodermal cells of D. malanogaster.

Source

Samples

From D. melanogaster (Aug 2014 BDGP Rel6 + ISO1 MT/dm6).

ChIP-seq data:

Filename Description Feature GEO-ID
1 ERR031126.sga Mesoderm|input||rep1 input -
2 ERR031127.sga Mesoderm|input||rep2 input -
3 ERR031128.sga Mesoderm|H3||rep1 H3 -
4 ERR031129.sga Mesoderm|H3||rep2 H3 -
5 ERR031130.sga Mesoderm|H3K27ac||rep1 H3K27ac -
6 ERR031131.sga Mesoderm|H3K27ac||rep2 H3K27ac -
7 ERR031132.sga Mesoderm|H3K4me1||rep1 H3K4me1 -
8 ERR031133.sga Mesoderm|H3K4me1||rep2 H3K4me1 -
9 ERR031134.sga Mesoderm|H3K4me3||rep1 H3K4me3 -
10 ERR031135.sga Mesoderm|H3K4me3||rep2 H3K4me3 -
11 ERR031136.sga Mesoderm|H3K36me3||rep1 H3K36me3 -
12 ERR031137.sga Mesoderm|H3K36me3||rep2 H3K36me3 -
13 ERR031138.sga Mesoderm|H3K79me3||rep1 H3K79me3 -
14 ERR031139.sga Mesoderm|H3K79me3||rep2 H3K79me3 -
15 ERR031140.sga Mesoderm|H3K27me3||rep1 H3K27me3 -
16 ERR031141.sga Mesoderm|H3K27me3||rep2 H3K27me3 -
17 ERR031142.sga Mesoderm|PolII||rep1 PolII -
18 ERR031143.sga Mesoderm|PolII||rep2 PolII -
19 ERR031144.sga Mesoderm|BiTS_Mef2 Mef2 -
20 ERR031145.sga Mesoderm|Mef2||rep1 Mef2 -
21 ERR031146.sga Mesoderm|Mef2||rep2 Mef2 -
Notes on samples nomenclature:

BiTS_Mef2 : Batch isolation of tissue-specific chromatin for immunoprecipitation targeted at Mef2.

Technical Notes

Dataset lifted-over from dm3.

References

Last update: 1 Oct 2018