Chen 2013, A global change in RNA Polymerase II pausing during the Drosophila midblastula transition. Lift Over from dm3.

Mnase-seq in staged Drosophila embryos.

• Raw data was downloaded from: GSE41686
• Input file format: SRA
• Download date: 4-10-2015

From D. melanogaster (Aug 2014 BDGP Rel6 + ISO1 MT/dm6).

ChIP-seq data:

	Filename	Description	Feature	GEO-ID
1	GSM1022889_06to08h_k27_1.sga	06to08h|H3K27me3|rep1	H3K27me3	GSM1022889
2	GSM1022905_preMBT_k4_1.sga	preMBT|H3K4me3|rep1	H3K4me3	GSM1022905
3	GSM1022906_preMBT_k4_2.sga	preMBT|H3K4me3|rep2	H3K4me3	GSM1022906
4	GSM1022907_preMBT_pol_1.sga	preMBT|pol-II|rep1	PolII	GSM1022907
5	GSM1022908_preMBT_pol_2.sga	preMBT|pol-II|rep2	PolII	GSM1022908
6	GSM1022909_preMBT_pol_3.sga	preMBT|pol-II|rep3	PolII	GSM1022909
7	GSM1022910_preMBT_pol_4.sga	preMBT|pol-II|rep4	PolII	GSM1022910
8	GSM1022911_preMBT_tbp_1.sga	preMBT|TBP|rep1	Tbp	GSM1022911
9	GSM1022912_preMBT_tbp_2.sga	preMBT|TBP|rep2	Tbp	GSM1022912
10	GSM1022890_MBT_h3ac_1.sga	MBT|H3ac|rep1	H3ac	GSM1022890
11	GSM1022891_MBT_h3ac_2.sga	MBT|H3ac|rep2	H3ac	GSM1022891
12	GSM1022892_MBT_k27_1.sga	MBT|H3K27me3|rep1	H3K27me3	GSM1022892
13	GSM1022893_MBT_k4_1.sga	MBT|H3K4me3|rep1	H3K4me3	GSM1022893
14	GSM1022894_MBT_k4_2.sga	MBT|H3K4me3|rep2	H3K4me3	GSM1022894
15	GSM1022895_MBT_pol_1.sga	MBT|pol-II|rep1	PolII	GSM1022895
16	GSM1022896_MBT_pol_2.sga	MBT|pol-II|rep2	PolII	GSM1022896
17	GSM1022897_MBT_pol_3.sga	MBT|pol-II|rep3	PolII	GSM1022897
18	GSM1022898_MBT_tbp_1.sga	MBT|TBP|rep1	Tbp	GSM1022898
19	GSM1022899_MBT_tbp_2.sga	MBT|TBP|rep2	Tbp	GSM1022899
20	GSM1022901_postMBT_k27_1.sga	postMBT|H3K27me3|rep1	H3K27me3	GSM1022901
21	GSM1022902_postMBT_pol_1.sga	postMBT|pol-II|rep1	PolII	GSM1022902
22	GSM1022903_postMBT_tbp_1.sga	postMBT|TBP|rep1	Tbp	GSM1022903
23	GSM1022913_preMBT_wce_1.sga	preMBT|Input|rep1	WCE	GSM1022913
24	GSM1022900_MBT_wce_1.sga	MBT|Input|rep1	WCE	GSM1022900
25	GSM1022904_postMBT_wce_1.sga	postMBT|Input|rep1	WCE	GSM1022904

DNase FAIRE data:

	Filename	Description	Feature	GEO-ID
1	GSM1022624_MBT_mnase_1.sga	MBT|MNase|rep1	mnase	GSM1022624

This dataset was lifted over from dm3

• Chen K, Johnston J, Shao W, Meier S, Staber C, Zeitlinger J
  A global change in RNA polymerase II pausing during the Drosophila midblastula transition. Elife. 2013 Aug 13;2:e00861. doi: 10.7554/eLife.00861. 23951546