EPDnew, the Drosophila Curated Promoter Database.

Description

The Eukaryotic Promoter Database is an annotated non-redundant collection of eukaryotic POL II promoters, for which the transcription start site has been determined experimentally.

Source

Raw data was downloaded from: EPD
Input file format: SGA
Download date: 26-9-2017

Samples

From D. melanogaster (Aug 2014 BDGP Rel6 + ISO1 MT/dm6).

Genome Annotation:

	Filename	Description	Feature	GEO-ID
1	Dm_EPDnew_005_dm6.sga	TSS from EPDnew rel 005	TSS	-
2	Dm_EPDnew_004_dm6.sga	TSS from EPDnew rel 004	TSS	-

Technical Notes

Files automatically generated during the database building process

References

Dreos R, Ambrosini G, Cavin Périer R, Bucher P
EPD and EPDnew, high-quality promoter resources in the next-generation sequencing era. Nucleic Acids Res. 2013 Jan;41(Database issue):D157-64. doi: 10.1093/nar/gks1233. Epub 2012 Nov 27. 23193273

Last update: 1 Oct 2018