MachiBase: a Drosophila melanogaster 5\'-end mRNA transcription database. LiftOver from dm3.

This series contains transcription start site mapping from MachiBase. The data were generated with the oligo-capping technology.

• Raw data for dm3 was downloaded from: machibase
• Input file format: TXT
• Download date: n/a

From D. melanogaster (Aug 2014 BDGP Rel6 + ISO1 MT/dm6).

Transcription Profiling data:

	Filename	Description	Feature	GEO-ID
1	embryo_oligocap.sga	Embryo oligo-capping	TSS	-
2	larva_oligocap.sga	Larva oligo-capping	TSS	-
3	youngFemale_oligocap.sga	Young female oligo-capping	TSS	-
4	youngMale_oligocap.sga	Young male oligo-capping	TSS	-
5	oldFemale_oligocap.sga	Old female oligo-capping	TSS	-
6	oldMale_oligocap.sga	Old male oligo-capping	TSS	-
7	s2_oligocap.sga	S2 cells oligo-capping	TSS	-
8	all_oligocap.sga	All tissues oligo-capping	TSS	-

Dataset lifted over from dm3

• Saito TL, Yoshimura J, Sasaki S, Ahsan B, Sasaki A, Kuroshu R, Morishita S
  UTGB toolkit for personalized genome browsers. Bioinformatics. 2009 Aug 1;25(15):1856-61. doi: 10.1093/bioinformatics/btp350. Epub 2009 Jun 3. 19497937

WIG files are available at:

https://epd.expasy.org/epd/bigWIG/dm3/machibase.BW

This file corresponds to the sample "All tissues, oligo-capping".