EPDnew, the Human Curated Promoter Database.

The Eukaryotic Promoter Database is an annotated non-redundant collection of eukaryotic POL II promoters, for which the transcription start site has been determined experimentally. Access to promoter sequences is provided by pointers to positions in nucleotide sequence entries. The annotation part of an entry includes description of the initiation site mapping data, cross-references to other databases, and bibliographic references. EPD is structured in a way that facilitates dynamic extraction of biologically meaningful promoter subsets for comparative sequence analysis.

• Data was downloaded from: EPD ftp
• Input file format: SGA, BED, FPS, DAT
• Download date: 11-04-2022

From D. pulex (Sep 2019 PA42 4.1/dpu2).

Genome Annotation:

	Filename	Description	Feature	GEO-ID
1	Dp_EPDnew_001_dpu2.sga.gz	TSS EPDnew rel 001	TSS	-

Files are automatically generated during the database build process. More information about the pipeline used can be found in the EPD documentation page for human.

• Meylan P, Dreos R, Ambrosini G, Groux R, Bucher P. EPD in 2020: enhanced data visualization and extension to ncRNA promoters. Nucleic Acids Res. 2020 Jan 8;48(D1):D65-D69. doi: 10.1093/nar/gkz1014. PMID: 31680159