Transcription Profiling data:
| Filename | Description | Feature | GEO-ID | |
| 1 | DRS049101.sga | Aortic Smooth Muscle cells|donor1 | CAGE | - |
| 2 | DRS049103.sga | Aortic Smooth Muscle cells|donor2 | CAGE | - |
| 3 | DRS049104.sga | Aortic Smooth Muscle cells|donor3 | CAGE | - |
| 4 | DRS049100.sga | Mesenchymal stem cells - bone marrow derived|donor1 | CAGE | - |
| 5 | DRS049094.sga | extraembryonic tissue|day07 (HH32) | CAGE | - |
| 6 | DRS049095.sga | extraembryonic tissue|day15 (HH41) | CAGE | - |
| 7 | DRS049099.sga | hepatocytes|tech_rep1 | CAGE | - |
| 8 | DRS049102.sga | hepatocytes|tech_rep2 | CAGE | - |
| 9 | DRS049097.sga | leg buds|day03 (HH20) | CAGE | - |
| 10 | DRS049074.sga | whole body|01hr30min (HH1) | CAGE | - |
| 11 | DRS049075.sga | whole body|05hr30min (HH1) | CAGE | - |
| 12 | DRS049076.sga | whole body|06hr (HH1-2) | CAGE | - |
| 13 | DRS049077.sga | whole body|14hr (HH3) | CAGE | - |
| 14 | DRS049078.sga | whole body|18hr (HH4) | CAGE | - |
| 15 | DRS049079.sga | whole body|22hr (HH5-6) | CAGE | - |
| 16 | DRS049080.sga | whole body|day01 (HH7 1-3 somites) | CAGE | - |
| 17 | DRS049081.sga | whole body|day01 (HH7 2-3 somites) | CAGE | - |
| 18 | DRS049082.sga | whole body|day01.5 (HH10) | CAGE | - |
| 19 | DRS049083.sga | whole body|day01.5 (HH11-12) | CAGE | - |
| 20 | DRS049084.sga | whole body|day02 (HH13) | CAGE | - |
| 21 | DRS049085.sga | whole body|day02 (HH14) | CAGE | - |
| 22 | DRS049086.sga | whole body|day02.5 (HH17) | CAGE | - |
| 23 | DRS049087.sga | whole body|day03 (HH19) | CAGE | - |
| 24 | DRS049088.sga | whole body|day03 (HH20) | CAGE | - |
| 25 | DRS049089.sga | whole body|day04 (HH23) | CAGE | - |
| 26 | DRS049098.sga | whole body|day05 (HH25-27) | CAGE | - |
| 27 | DRS049090.sga | whole body|day05 (HH26-27) | CAGE | - |
| 28 | DRS049091.sga | whole body|day07 (HH32) | CAGE | - |
| 29 | DRS049073.sga | whole body|day10 (HH37) | CAGE | - |
| 30 | DRS049092.sga | whole body|day15 (HH41) | CAGE | - |
| 31 | DRS049093.sga | whole body|day20 (HH45) | CAGE | - |
| 32 | DRS049096.sga | wing buds|day03 (HH20) | CAGE | - |
| 33 | all_samples_merged.sga | all samples merged | CAGE | - |
FASTQ files were mapped to the genome using Bowtie v0.12.8. SAM files were then converted into bam using samtools v0.1.14 and to bed using bamToBed v2.12.0 (bedtools). SGA conversion was carried out using bed2sga.pl (ChIP-Seq v. 1.5.3).