Boyle 2008, CD4+ DNase, open chromatin mapping, GSE8486

Description

Mapping DNaseI hypersensitive (HS) sites is an accurate method of identifying the location of genetic regulatory elements, including promoters, enhancers, silencers, insulators, and locus control regions. We employed whole genome tiled array strategies to identify DNaseI HS sites within human primary CD4+ T cells.

Source

Files downloaded from GEO series: GSE8486
Input file format: GFF

Samples

From H. sapiens (March 2006 NCBI36/hg18).

Filename Description Feature GEO-ID
1 dnaseHS.sga CD4+ DNase DNase -

Technical Notes

The sga file was automatically generated from the original BED file providing the starting and ending postions of mapped sequence tags in the human genome assembly 2006 (NCBI36/hg18).

References

  1. Boyle AP, Davis S, Shulha HP, Meltzer P et al.
    High-resolution mapping and characterization of open chromatin across the genome. Cell 2008 Jan 25;132(2):311-22. PMID: 18243105

  2. GEO series GSE8486 Whole genome DNAse hypersensitivity in human CD4+ T-cells.