Cui 2009, Chromatin Signatures in primary hematopoietic stem cells

ChIP-seq against 8 histone methylations, histone variant H2AZ, and RNA Polymerase II (Pol II) in both human CD133+ and CD36+ cells (20 samples in total). Chromatin digested with micrococcal nuclease(MNase).

• Raw data was downloaded from: GEO series: GSE12646
• Input file format: BED

From H. sapiens (March 2006 NCBI36/hg18).

ChIP-seq data:

	Filename	Description	Feature	GEO-ID
1	GSM317582_CD133-H2AZ.sga	CD133 HSCs/HPCs|H2AZ|MNase	H2AZ	GSM317582
2	GSM317583_CD133-H3K27me1.sga	CD133 HSCs/HPCs|H3K27me1|MNase	H3K27me1	GSM317583
3	GSM317584_CD133-H3K27me3.sga	CD133 HSCs/HPCs|H3K27me3|MNase	H3K27me3	GSM317584
4	GSM317585_CD133-H3K36me3.sga	CD133 HSCs/HPCs|H3K36me3|MNase	H3K36me3	GSM317585
5	GSM317586_CD133-H3K4me1.sga	CD133 HSCs/HPCs|H3K4me1|MNase	H3K4me1	GSM317586
6	GSM317587_CD133-H3K4me3.sga	CD133 HSCs/HPCs|H3K4me3|MNase	H3K4me3	GSM317587
7	GSM317588_CD133-H3K9me1.sga	CD133 HSCs/HPCs|H3K9me1|MNase	H3K9me1	GSM317588
8	GSM317589_CD133-H3K9me3.sga	CD133 HSCs/HPCs|H3K9me3|MNase	H3K9me3	GSM317589
9	GSM317590_CD133-H4K20me1.sga	CD133 HSCs/HPCs|H4K20me1|MNase	H4K20me1	GSM317590
10	GSM317591_CD133-PolII.sga	CD133 HSCs/HPCs|PolII	PolII	GSM317591
11	GSM317592_CD36-H2AZ.sga	CD36 HSCs/HPCs|H2AZ|MNase	H2AZ	GSM317592
12	GSM317593_CD36-H3K27me1.sga	CD36 HSCs/HPCs|H3K27me1|MNase	H3K27me1	GSM317593
13	GSM317594_CD36-H3K27me3.sga	CD36 HSCs/HPCs|H3K27me3|MNase	H3K27me3	GSM317594
14	GSM317595_CD36-H3K36me3.sga	CD36 HSCs/HPCs|H3K36me3|MNase	H3K36me3	GSM317595
15	GSM317596_CD36-H3K4me1.sga	CD36 HSCs/HPCs|H3K4me1|MNase	H3K4me1	GSM317596
16	GSM317597_CD36-H3K4me3.sga	CD36 HSCs/HPCs|H3K4me3|MNase	H3K4me3	GSM317597
17	GSM317598_CD36-H3K9me1.sga	CD36 HSCs/HPCs|H3K9me1|MNase	H3K9me1	GSM317598
18	GSM317599_CD36-H3K9me3.sga	CD36 HSCs/HPCs|H3K9me3|MNase	H3K9me3	GSM317599
19	GSM317600_CD36-H4K20me1.sga	CD36 HSCs/HPCs|H4K20me1|MNase	H4K20me1	GSM317600
20	GSM317601_CD36-PolII.sga	CD36 HSCs/HPCs|PolII	PolII	GSM317601

SGA conversion was carried out using bed2sga.pl (ChIP-seq).

• Cui K, Zang C, Roh TY, Schones DE, Childs RW, Peng W, Zhao K
  Chromatin signatures in multipotent human hematopoietic stem cells indicate the fate of bivalent genes during differentiation. Cell Stem Cell. 2009 Jan 9;4(1):80-93. doi: 10.1016/j.stem.2008.11.011. 19128795
• GEO series GSE12646: Chromatin Signatures in Multipotent Human HSCs Indicate the Fate of Bivalent Genes during Differentiation