ChIP-seq experiment investigating 15 different cell types for 25 different histone modifications. The ChIP-seq method involves first using formaldehyde to cross-link histones and other DNA-associated proteins to genomic DNA within cells. The cross-linked chromatin is subsequently extracted, mechanically sheared, and immunoprecipitated using specific antibodies. After reversal of cross-links, the immunoprecipitated DNA is sequenced and mapped to the human reference genome. The relative enrichment of each antibody-target (epitope) across the genome is inferred from the density of mapped fragments.
| Filename | Description | Feature | GEO-ID | |
| 1 | Dnd41-CTCF.sga | Dnd41 CTCF | CTCF | - |
| 2 | Dnd41-H2A.Z.sga | Dnd41 H2A.Z | H2A.Z | - |
| 3 | Dnd41-H3K27ac.sga | Dnd41 H3K27ac | H3K27ac | - |
| 4 | Dnd41-H3K36me3.sga | Dnd41 H3K36me3 | H3K36me3 | - |
| 5 | Dnd41-H3K4me1.sga | Dnd41 H3K4me1 | H3K4me1 | - |
| 6 | Dnd41-H3K4me2.sga | Dnd41 H3K4me2 | H3K4me2 | - |
| 7 | Dnd41-H3K4me3.sga | Dnd41 H3K4me3 | H3K4me3 | - |
| 8 | Dnd41-H3K79me2.sga | Dnd41 H3K79me2 | H3K79me2 | - |
| 9 | Dnd41-H3K9ac.sga | Dnd41 H3K9ac | H3K9ac | - |
| 10 | Dnd41-H3K9me3.sga | Dnd41 H3K9me3 | H3K9me3 | - |
| 11 | Dnd41-H4K20me1.sga | Dnd41 H4K20me1 | H4K20me1 | - |
| 12 | Dnd41-Input.sga | Dnd41 Input | Input | - |
| 13 | GM12878-CTCF.sga | GM12878 CTCF | CTCF | - |
| 14 | GM12878-EZH2.sga | GM12878 EZH2 | EZH2 | - |
| 15 | GM12878-H2A.Z.sga | GM12878 H2A.Z | H2A.Z | - |
| 16 | GM12878-H3K27ac.sga | GM12878 H3K27ac | H3K27ac | - |
| 17 | GM12878-H3K27me3.sga | GM12878 H3K27me3 | H3K27me3 | - |
| 18 | GM12878-H3K36me3.sga | GM12878 H3K36me3 | H3K36me3 | - |
| 19 | GM12878-H3K4me1.sga | GM12878 H3K4me1 | H3K4me1 | - |
| 20 | GM12878-H3K4me2.sga | GM12878 H3K4me2 | H3K4me2 | - |
| 21 | GM12878-H3K4me3.sga | GM12878 H3K4me3 | H3K4me3 | - |
| 22 | GM12878-H3K79me2.sga | GM12878 H3K79me2 | H3K79me2 | - |
| 23 | GM12878-H3K9ac.sga | GM12878 H3K9ac | H3K9ac | - |
| 24 | GM12878-H3K9me3.sga | GM12878 H3K9me3 | H3K9me3 | - |
| 25 | GM12878-H4K20me1.sga | GM12878 H4K20me1 | H4K20me1 | - |
| 26 | GM12878-Input.sga | GM12878 Input | Input | - |
| 27 | H1-hESC-CHD1.sga | H1-hESC CHD1 | CHD1 | - |
| 28 | H1-hESC-CTCF.sga | H1-hESC CTCF | CTCF | - |
| 29 | H1-hESC-H2A.Z.sga | H1-hESC H2A.Z | H2A.Z | - |
| 30 | H1-hESC-H3K27ac.sga | H1-hESC H3K27ac | H3K27ac | - |
| 31 | H1-hESC-H3K27me3.sga | H1-hESC H3K27me3 | H3K27me3 | - |
| 32 | H1-hESC-H3K36me3.sga | H1-hESC H3K36me3 | H3K36me3 | - |
| 33 | H1-hESC-H3K4me1.sga | H1-hESC H3K4me1 | H3K4me1 | - |
| 34 | H1-hESC-H3K4me2.sga | H1-hESC H3K4me2 | H3K4me2 | - |
| 35 | H1-hESC-H3K4me3.sga | H1-hESC H3K4me3 | H3K4me3 | - |
| 36 | H1-hESC-H3K79me2.sga | H1-hESC H3K79me2 | H3K79me2 | - |
| 37 | H1-hESC-H3K9ac.sga | H1-hESC H3K9ac | H3K9ac | - |
| 38 | H1-hESC-H3K9me3.sga | H1-hESC H3K9me3 | H3K9me3 | - |
| 39 | H1-hESC-H4K20me1.sga | H1-hESC H4K20me1 | H4K20me1 | - |
| 40 | H1-hESC-Input.sga | H1-hESC Input | Input | - |
| 41 | H1-hESC-JARID1A.sga | H1-hESC JARID1A | JARID1A | - |
| 42 | H1-hESC-RBBP5.sga | H1-hESC RBBP5 | RBBP5 | - |
| 43 | HMEC-CTCF.sga | HMEC CTCF | CTCF | - |
| 44 | HMEC-EZH2.sga | HMEC EZH2 | EZH2 | - |
| 45 | HMEC-H2A.Z.sga | HMEC H2A.Z | H2A.Z | - |
| 46 | HMEC-H3K27ac.sga | HMEC H3K27ac | H3K27ac | - |
| 47 | HMEC-H3K27me3.sga | HMEC H3K27me3 | H3K27me3 | - |
| 48 | HMEC-H3K36me3.sga | HMEC H3K36me3 | H3K36me3 | - |
| 49 | HMEC-H3K4me1.sga | HMEC H3K4me1 | H3K4me1 | - |
| 50 | HMEC-H3K4me2.sga | HMEC H3K4me2 | H3K4me2 | - |
| 51 | HMEC-H3K4me3.sga | HMEC H3K4me3 | H3K4me3 | - |
| 52 | HMEC-H3K79me2.sga | HMEC H3K79me2 | H3K79me2 | - |
| 53 | HMEC-H3K9ac.sga | HMEC H3K9ac | H3K9ac | - |
| 54 | HMEC-H3K9me3.sga | HMEC H3K9me3 | H3K9me3 | - |
| 55 | HMEC-H4K20me1.sga | HMEC H4K20me1 | H4K20me1 | - |
| 56 | HMEC-Input.sga | HMEC Input | Input | - |
| 57 | HSMM-CTCF.sga | HSMM CTCF | CTCF | - |
| 58 | HSMM-EZH2.sga | HSMM EZH2 | EZH2 | - |
| 59 | HSMM-H2A.Z.sga | HSMM H2A.Z | H2A.Z | - |
| 60 | HSMM-H3K27ac.sga | HSMM H3K27ac | H3K27ac | - |
| 61 | HSMM-H3K27me3.sga | HSMM H3K27me3 | H3K27me3 | - |
| 62 | HSMM-H3K36me3.sga | HSMM H3K36me3 | H3K36me3 | - |
| 63 | HSMM-H3K4me1.sga | HSMM H3K4me1 | H3K4me1 | - |
| 64 | HSMM-H3K4me2.sga | HSMM H3K4me2 | H3K4me2 | - |
| 65 | HSMM-H3K4me3.sga | HSMM H3K4me3 | H3K4me3 | - |
| 66 | HSMM-H3K79me2.sga | HSMM H3K79me2 | H3K79me2 | - |
| 67 | HSMM-H3K9ac.sga | HSMM H3K9ac | H3K9ac | - |
| 68 | HSMM-H3K9me3.sga | HSMM H3K9me3 | H3K9me3 | - |
| 69 | HSMM-H4K20me1.sga | HSMM H4K20me1 | H4K20me1 | - |
| 70 | HSMM-Input.sga | HSMM Input | Input | - |
| 71 | HSMMtube-CTCF.sga | HSMMtube CTCF | CTCF | - |
| 72 | HSMMtube-H2A.Z.sga | HSMMtube H2A.Z | H2A.Z | - |
| 73 | HSMMtube-H3K27ac.sga | HSMMtube H3K27ac | H3K27ac | - |
| 74 | HSMMtube-H3K36me3.sga | HSMMtube H3K36me3 | H3K36me3 | - |
| 75 | HSMMtube-H3K4me1.sga | HSMMtube H3K4me1 | H3K4me1 | - |
| 76 | HSMMtube-H3K4me2.sga | HSMMtube H3K4me2 | H3K4me2 | - |
| 77 | HSMMtube-H3K4me3.sga | HSMMtube H3K4me3 | H3K4me3 | - |
| 78 | HSMMtube-H3K79me2.sga | HSMMtube H3K79me2 | H3K79me2 | - |
| 79 | HSMMtube-H3K9ac.sga | HSMMtube H3K9ac | H3K9ac | - |
| 80 | HSMMtube-H3K9me3.sga | HSMMtube H3K9me3 | H3K9me3 | - |
| 81 | HSMMtube-H4K20me1.sga | HSMMtube H4K20me1 | H4K20me1 | - |
| 82 | HSMMtube-Input.sga | HSMMtube Input | Input | - |
| 83 | HUVEC-CTCF.sga | HUVEC CTCF | CTCF | - |
| 84 | HUVEC-H2A.Z.sga | HUVEC H2A.Z | H2A.Z | - |
| 85 | HUVEC-H3K27ac.sga | HUVEC H3K27ac | H3K27ac | - |
| 86 | HUVEC-H3K27me3.sga | HUVEC H3K27me3 | H3K27me3 | - |
| 87 | HUVEC-H3K36me3.sga | HUVEC H3K36me3 | H3K36me3 | - |
| 88 | HUVEC-H3K4me1.sga | HUVEC H3K4me1 | H3K4me1 | - |
| 89 | HUVEC-H3K4me2.sga | HUVEC H3K4me2 | H3K4me2 | - |
| 90 | HUVEC-H3K4me3.sga | HUVEC H3K4me3 | H3K4me3 | - |
| 91 | HUVEC-H3K79me2.sga | HUVEC H3K79me2 | H3K79me2 | - |
| 92 | HUVEC-H3K9ac.sga | HUVEC H3K9ac | H3K9ac | - |
| 93 | HUVEC-H3K9me1.sga | HUVEC H3K9me1 | H3K9me1 | - |
| 94 | HUVEC-H4K20me1.sga | HUVEC H4K20me1 | H4K20me1 | - |
| 95 | HUVEC-Input.sga | HUVEC Input | Input | - |
| 96 | HUVEC-Pol2.sga | HUVEC Pol2 | Pol2 | - |
| 97 | HeLa-S3-CTCF.sga | HeLa-S3 CTCF | CTCF | - |
| 98 | HeLa-S3-H2A.Z.sga | HeLa-S3 H2A.Z | H2A.Z | - |
| 99 | HeLa-S3-H3K27ac.sga | HeLa-S3 H3K27ac | H3K27ac | - |
| 100 | HeLa-S3-H3K27me3.sga | HeLa-S3 H3K27me3 | H3K27me3 | - |
| 101 | HeLa-S3-H3K36me3.sga | HeLa-S3 H3K36me3 | H3K36me3 | - |
| 102 | HeLa-S3-H3K4me1.sga | HeLa-S3 H3K4me1 | H3K4me1 | - |
| 103 | HeLa-S3-H3K4me2.sga | HeLa-S3 H3K4me2 | H3K4me2 | - |
| 104 | HeLa-S3-H3K4me3.sga | HeLa-S3 H3K4me3 | H3K4me3 | - |
| 105 | HeLa-S3-H3K79me2.sga | HeLa-S3 H3K79me2 | H3K79me2 | - |
| 106 | HeLa-S3-H3K9ac.sga | HeLa-S3 H3K9ac | H3K9ac | - |
| 107 | HeLa-S3-H3K9me3.sga | HeLa-S3 H3K9me3 | H3K9me3 | - |
| 108 | HeLa-S3-H4K20me1.sga | HeLa-S3 H4K20me1 | H4K20me1 | - |
| 109 | HeLa-S3-Input.sga | HeLa-S3 Input | Input | - |
| 110 | HepG2-CTCF.sga | HepG2 CTCF | CTCF | - |
| 111 | HepG2-EZH2.sga | HepG2 EZH2 | EZH2 | - |
| 112 | HepG2-H2A.Z.sga | HepG2 H2A.Z | H2A.Z | - |
| 113 | HepG2-H3K27ac.sga | HepG2 H3K27ac | H3K27ac | - |
| 114 | HepG2-H3K27me3.sga | HepG2 H3K27me3 | H3K27me3 | - |
| 115 | HepG2-H3K36me3.sga | HepG2 H3K36me3 | H3K36me3 | - |
| 116 | HepG2-H3K4me1.sga | HepG2 H3K4me1 | H3K4me1 | - |
| 117 | HepG2-H3K4me2.sga | HepG2 H3K4me2 | H3K4me2 | - |
| 118 | HepG2-H3K4me3.sga | HepG2 H3K4me3 | H3K4me3 | - |
| 119 | HepG2-H3K79me2.sga | HepG2 H3K79me2 | H3K79me2 | - |
| 120 | HepG2-H3K9ac.sga | HepG2 H3K9ac | H3K9ac | - |
| 121 | HepG2-H4K20me1.sga | HepG2 H4K20me1 | H4K20me1 | - |
| 122 | HepG2-Input.sga | HepG2 Input | Input | - |
| 123 | K562-CHD1.sga | K562 CHD1 | CHD1 | - |
| 124 | K562-CTCF.sga | K562 CTCF | CTCF | - |
| 125 | K562-EZH2.sga | K562 EZH2 | EZH2 | - |
| 126 | K562-H2A.Z.sga | K562 H2A.Z | H2A.Z | - |
| 127 | K562-H3K27ac.sga | K562 H3K27ac | H3K27ac | - |
| 128 | K562-H3K27me3.sga | K562 H3K27me3 | H3K27me3 | - |
| 129 | K562-H3K36me3.sga | K562 H3K36me3 | H3K36me3 | - |
| 130 | K562-H3K4me1.sga | K562 H3K4me1 | H3K4me1 | - |
| 131 | K562-H3K4me2.sga | K562 H3K4me2 | H3K4me2 | - |
| 132 | K562-H3K4me3.sga | K562 H3K4me3 | H3K4me3 | - |
| 133 | K562-H3K79me2.sga | K562 H3K79me2 | H3K79me2 | - |
| 134 | K562-H3K9ac.sga | K562 H3K9ac | H3K9ac | - |
| 135 | K562-H3K9me1.sga | K562 H3K9me1 | H3K9me1 | - |
| 136 | K562-H3K9me3.sga | K562 H3K9me3 | H3K9me3 | - |
| 137 | K562-H4K20me1.sga | K562 H4K20me1 | H4K20me1 | - |
| 138 | K562-HDAC1.sga | K562 HDAC1 | HDAC1 | - |
| 139 | K562-HDAC2.sga | K562 HDAC2 | HDAC2 | - |
| 140 | K562-Input.sga | K562 Input | Input | - |
| 141 | K562-PHF8.sga | K562 PHF8 | PHF8 | - |
| 142 | K562-PLU1.sga | K562 PLU1 | PLU1 | - |
| 143 | K562-Pol2.sga | K562 Pol2 | Pol2 | - |
| 144 | K562-RBBP5.sga | K562 RBBP5 | RBBP5 | - |
| 145 | K562-SAP30.sga | K562 SAP30 | SAP30 | - |
| 146 | K562-p300.sga | K562 p300 | p300 | - |
| 147 | NH-A-CTCF.sga | NH-A CTCF | CTCF | - |
| 148 | NH-A-EZH2.sga | NH-A EZH2 | EZH2 | - |
| 149 | NH-A-H2A.Z.sga | NH-A H2A.Z | H2A.Z | - |
| 150 | NH-A-H3K27ac.sga | NH-A H3K27ac | H3K27ac | - |
| 151 | NH-A-H3K27me3.sga | NH-A H3K27me3 | H3K27me3 | - |
| 152 | NH-A-H3K36me3.sga | NH-A H3K36me3 | H3K36me3 | - |
| 153 | NH-A-H3K4me1.sga | NH-A H3K4me1 | H3K4me1 | - |
| 154 | NH-A-H3K4me2.sga | NH-A H3K4me2 | H3K4me2 | - |
| 155 | NH-A-H3K4me3.sga | NH-A H3K4me3 | H3K4me3 | - |
| 156 | NH-A-H3K79me2.sga | NH-A H3K79me2 | H3K79me2 | - |
| 157 | NH-A-H3K9ac.sga | NH-A H3K9ac | H3K9ac | - |
| 158 | NH-A-H3K9me3.sga | NH-A H3K9me3 | H3K9me3 | - |
| 159 | NH-A-H4K20me1.sga | NH-A H4K20me1 | H4K20me1 | - |
| 160 | NH-A-Input.sga | NH-A Input | Input | - |
| 161 | NHDF-Ad-CTCF.sga | NHDF-Ad CTCF | CTCF | - |
| 162 | NHDF-Ad-EZH2.sga | NHDF-Ad EZH2 | EZH2 | - |
| 163 | NHDF-Ad-H3K27ac.sga | NHDF-Ad H3K27ac | H3K27ac | - |
| 164 | NHDF-Ad-H3K27me3.sga | NHDF-Ad H3K27me3 | H3K27me3 | - |
| 165 | NHDF-Ad-H3K36me3.sga | NHDF-Ad H3K36me3 | H3K36me3 | - |
| 166 | NHDF-Ad-H3K4me1.sga | NHDF-Ad H3K4me1 | H3K4me1 | - |
| 167 | NHDF-Ad-H3K4me2.sga | NHDF-Ad H3K4me2 | H3K4me2 | - |
| 168 | NHDF-Ad-H3K4me3.sga | NHDF-Ad H3K4me3 | H3K4me3 | - |
| 169 | NHDF-Ad-H3K79me2.sga | NHDF-Ad H3K79me2 | H3K79me2 | - |
| 170 | NHDF-Ad-H3K9ac.sga | NHDF-Ad H3K9ac | H3K9ac | - |
| 171 | NHDF-Ad-H3K9me3.sga | NHDF-Ad H3K9me3 | H3K9me3 | - |
| 172 | NHDF-Ad-H4K20me1.sga | NHDF-Ad H4K20me1 | H4K20me1 | - |
| 173 | NHDF-Ad-Input.sga | NHDF-Ad Input | Input | - |
| 174 | NHEK-CTCF.sga | NHEK CTCF | CTCF | - |
| 175 | NHEK-EZH2.sga | NHEK EZH2 | EZH2 | - |
| 176 | NHEK-H2A.Z.sga | NHEK H2A.Z | H2A.Z | - |
| 177 | NHEK-H3K27ac.sga | NHEK H3K27ac | H3K27ac | - |
| 178 | NHEK-H3K27me3.sga | NHEK H3K27me3 | H3K27me3 | - |
| 179 | NHEK-H3K36me3.sga | NHEK H3K36me3 | H3K36me3 | - |
| 180 | NHEK-H3K4me1.sga | NHEK H3K4me1 | H3K4me1 | - |
| 181 | NHEK-H3K4me2.sga | NHEK H3K4me2 | H3K4me2 | - |
| 182 | NHEK-H3K4me3.sga | NHEK H3K4me3 | H3K4me3 | - |
| 183 | NHEK-H3K79me2.sga | NHEK H3K79me2 | H3K79me2 | - |
| 184 | NHEK-H3K9ac.sga | NHEK H3K9ac | H3K9ac | - |
| 185 | NHEK-H3K9me1.sga | NHEK H3K9me1 | H3K9me1 | - |
| 186 | NHEK-H3K9me3.sga | NHEK H3K9me3 | H3K9me3 | - |
| 187 | NHEK-H4K20me1.sga | NHEK H4K20me1 | H4K20me1 | - |
| 188 | NHEK-Input.sga | NHEK Input | Input | - |
| 189 | NHEK-Pol2.sga | NHEK Pol2 | Pol2 | - |
| 190 | NHLF-CTCF.sga | NHLF CTCF | CTCF | - |
| 191 | NHLF-EZH2.sga | NHLF EZH2 | EZH2 | - |
| 192 | NHLF-H2A.Z.sga | NHLF H2A.Z | H2A.Z | - |
| 193 | NHLF-H3K27ac.sga | NHLF H3K27ac | H3K27ac | - |
| 194 | NHLF-H3K27me3.sga | NHLF H3K27me3 | H3K27me3 | - |
| 195 | NHLF-H3K36me3.sga | NHLF H3K36me3 | H3K36me3 | - |
| 196 | NHLF-H3K4me1.sga | NHLF H3K4me1 | H3K4me1 | - |
| 197 | NHLF-H3K4me2.sga | NHLF H3K4me2 | H3K4me2 | - |
| 198 | NHLF-H3K4me3.sga | NHLF H3K4me3 | H3K4me3 | - |
| 199 | NHLF-H3K79me2.sga | NHLF H3K79me2 | H3K79me2 | - |
| 200 | NHLF-H3K9ac.sga | NHLF H3K9ac | H3K9ac | - |
| 201 | NHLF-H3K9me3.sga | NHLF H3K9me3 | H3K9me3 | - |
| 202 | NHLF-H4K20me1.sga | NHLF H4K20me1 | H4K20me1 | - |
| 203 | NHLF-Input.sga | NHLF Input | Input | - |
| 204 | Osteobl-CTCF.sga | Osteobl CTCF | CTCF | - |
| 205 | Osteobl-H2A.Z.sga | Osteobl H2A.Z | H2A.Z | - |
| 206 | Osteobl-H3K27ac.sga | Osteobl H3K27ac | H3K27ac | - |
| 207 | Osteobl-H3K27me3.sga | Osteobl H3K27me3 | H3K27me3 | - |
| 208 | Osteobl-H3K36me3.sga | Osteobl H3K36me3 | H3K36me3 | - |
| 209 | Osteobl-H3K4me1.sga | Osteobl H3K4me1 | H3K4me1 | - |
| 210 | Osteobl-H3K4me2.sga | Osteobl H3K4me2 | H3K4me2 | - |
| 211 | Osteobl-H3K79me2.sga | Osteobl H3K79me2 | H3K79me2 | - |
| 212 | Osteobl-H3K9me3.sga | Osteobl H3K9me3 | H3K9me3 | - |
| 213 | Osteobl-H4K20me1.sga | Osteobl H4K20me1 | H4K20me1 | - |
| 214 | Osteobl-Input.sga | Osteobl Input | Input | - |
BAM files were downloaded from UCSC and converted to BED files. These were lifted over to hg 18 from hg19 and converted into SGA files using in-house software