Johnson 2007, In vivo binding of NRSF

ChIP-seq againt NRSF in Jurkat T cell line. The NRSF (neuron-restrictive silencer factor) is also known as REST (repressor element-1 silencing transcription factor). Mock is used as control.
The mapping was originally done on hg17. The data has been lifted over hg18.

• Raw data was downloaded from GEO series: GSE13047
  Input file format: TXT

From H. sapiens (March 2006 NCBI36/hg18).

ChIP-seq data:

	Filename	Description	Feature	GEO-ID
1	GSM327023_chipFC1592.sga	T-cell NRSF, Rep 1	NRSF	GSM327023
2	GSM327023_chipFC1862.sga	T-cell NRSF, Rep 2	NRSF	GSM327023
3	GSM327023_chipFC2002.sga	T-cell NRSF, Rep 3	NRSF	GSM327023
4	GSM327024_mockFC1592.sga	T-cell Mock, Rep 1	mock	GSM327024
5	GSM327024_mockFC1862.sga	T-cell Mock, Rep 2	mock	GSM327024
6	GSM327024_mockFC2002.sga	T-cell Mock, Rep 3	mock	GSM327024

Three biological replicates were sequenced for the tow samples.

BED files were automatically generated from the original TXT files using ad hoc scripts. SGA conversion was carried out using bed2sga.pl (ChIP-Seq v. 1.5.2).

• Johnson DS, Mortazavi A, Myers RM, Wold B
  Genome-wide mapping of in vivo protein-DNA interactions. Science. 2007 Jun 8;316(5830):1497-502. Epub 2007 May 31. 17540862
• GEO series GSE13047: Genome-Wide Mapping of in Vivo Protein-DNA Interactions