Schones 2008, CD4+ cells, nucleosome profiling, GSE10437

ChIP-seq against posttranstional variant phospo Ser5 of RNA Polymerase II (Pol II) in both resting and activated human CD4+ T cells.
Nucleosome mapped by MNase digestion.

• Raw data was downloaded via wget from: http://dir.nhlbi.nih.gov/papers/lmi/epigenomes/data
• Input file format: BED

From H. sapiens (March 2006 NCBI36/hg18).

ChIP-seq data:

	Filename	Description	Feature	GEO-ID
1	PolII-act-unP.sga	CD4+ Activated Unphosphorylated PolII	PolII-unP	-
2	PolII-rest-unP.sga	CD4+ Resting Unphosphorylated PolII	PolII-unP	-
3	PolII-act-S5P.sga	CD4+ Activated Ser5 phosphorylated PolII	PolII-S5P	-
4	PolII-rest-S5P.sga	CD4+ Resting Ser5 phosphorylated PolII	PolII-S5P	-

DNase FAIRE data:

	Filename	Description	Feature	GEO-ID
1	ActivatedNucleosomes.sga	CD4+ Activated Nucleosomes	MNase	-
2	RestingNucleosomes.sga	CD4+ Resting Nucleosomes	MNase	-

BED files were converted to SGA using bed2sga.pl (ChIP-Seq v. 1.5.2).

• Schones DE, Cui K, Cuddapah S, Roh TY, Barski A, Wang Z, Wei G, Zhao K
  Dynamic regulation of nucleosome positioning in the human genome. Cell. 2008 Mar 7;132(5):887-98. doi: 10.1016/j.cell.2008.02.022. 18329373
• GEO series GSE10437: Dynamic regulation of nucleosome positioning in the human genome