Wang 2008, CD4+ cells, histone acetylations

ChIP-seq against 18 histone acetylations in human CD4+ T cells. See also Barski 2007 for additiona histone variants.

• Raw data was downloaded from: UCSC
• Input file format: BED

From H. sapiens (March 2006 NCBI36/hg18).

ChIP-seq data:

	Filename	Description	Feature	GEO-ID
1	H2AK5ac.sga	CD4+ H2AK5ac	H2AK5ac	-
2	H2AK9ac.sga	CD4+ H2AK9ac	H2AK9ac	-
3	H2BK120ac.sga	CD4+ H2BK120ac	H2BK120ac	-
4	H2BK12ac.sga	CD4+ H2BK12ac	H2BK12ac	-
5	H2BK20ac.sga	CD4+ H2BK20ac	H2BK20ac	-
6	H2BK5ac.sga	CD4+ H2BK5ac	H2BK5ac	-
7	H3K14ac.sga	CD4+ H3K14ac	H3K14ac	-
8	H3K18ac.sga	CD4+ H3K18ac	H3K18ac	-
9	H3K23ac.sga	CD4+ H3K23ac	H3K23ac	-
10	H3K27ac.sga	CD4+ H3K27ac	H3K27ac	-
11	H3K36ac.sga	CD4+ H3K36ac	H3K36ac	-
12	H3K4ac.sga	CD4+ H3K4ac	H3K4ac	-
13	H3K9ac.sga	CD4+ H3K9ac	H3K9ac	-
14	H4K12ac.sga	CD4+ H4K12ac	H4K12ac	-
15	H4K16ac.sga	CD4+ H4K16ac	H4K16ac	-
16	H4K5ac.sga	CD4+ H4K5ac	H4K5ac	-
17	H4K8ac.sga	CD4+ H4K8ac	H4K8ac	-
18	H4K91ac.sga	CD4+ H4K91ac	H4K91ac	-

SGA conversion was carried out using bed2sga.pl (ChIP-Seq v. 1.5.2).

• Wang Z, Zang C, Rosenfeld JA, Schones DE, Barski A, Cuddapah S, Cui K, Roh TY, Peng W, Zhang MQ, Zhao K
  Combinatorial patterns of histone acetylations and methylations in the human genome. Nat Genet. 2008 Jul;40(7):897-903. doi: 10.1038/ng.154. Epub 2008 Jun 15. 18552846