Andersson 2014, H3K4me1 and H3K27ac in several blood cell types.

Description

H3K4me1 and H3K27ac maps for a number of major human blood cell types (CD4, CD8, CD19 and CD56)

Source

Raw data was downloaded from GEO: GSE40668
Input file format: BED
Download date: 23-03-2106

Samples

From H. sapiens (Feb 2009 GRCh37/hg19).

ChIP-seq data:

	Filename	Description	Feature	GEO-ID
1	GSM998994_C_CD19_H3K4me1.sga	CD19\|H3K4me1\|rep1	H3K4me1	GSM998994
2	GSM998995_A_CD19_H3K4me1.sga	CD19\|H3K4me1\|rep2	H3K4me1	GSM998995
3	GSM998996_A_CD19_H3K27ac.sga	CD19\|H3K27ac\|rep1	H3K27ac	GSM998996
4	GSM998997_C_CD19_H3K27ac.sga	CD19\|H3K27ac\|rep2	H3K27ac	GSM998997
5	GSM998998_A_CD8_H3K4me1.sga	CD8\|H3K4me1\|rep1	H3K4me1	GSM998998
6	GSM998999_C_CD8_H3K4me1.sga	CD8\|H3K4me1\|rep2	H3K4me1	GSM998999
7	GSM999000_A_CD8_H3K27ac.sga	CD8\|H3K27ac\|rep1	H3K27ac	GSM999000
8	GSM999001_C_CD8_H3K27ac.sga	CD8\|H3K27ac\|rep2	H3K27ac	GSM999001
9	GSM999002_E_CD4_H3K4me1.sga	CD4\|H3K4me1\|rep1	H3K4me1	GSM999002
10	GSM999003_S036_CD4_H3K4me1.sga	CD4\|H3K4me1\|rep2	H3K4me1	GSM999003
11	GSM999004_E_CD4_H3K27ac.sga	CD4\|H3K27ac\|rep1	H3K27ac	GSM999004
12	GSM999005_S036_CD4_H3K27ac.sga	CD4\|H3K27ac\|rep2	H3K27ac	GSM999005
13	GSM999006_C_CD56_H3K4me1.sga	CD56\|H3K4me1\|rep1	H3K4me1	GSM999006
14	GSM999007_A_CD56_H3K4me1.sga	CD56\|H3K4me1\|rep2	H3K4me1	GSM999007
15	GSM999008_A_CD56_H3K27ac.sga	CD56\|H3K27ac\|rep1	H3K27ac	GSM999008
16	GSM999009_C_CD56_H3K27ac.sga	CD56\|H3K27ac\|rep2	H3K27ac	GSM999009
17	GSM999010_A_Input_CD19.sga	CD19\|Input\|rep1	Input	GSM999010
18	GSM999011_A_Input_CD56.sga	CD56\|Input\|rep1	Input	GSM999011
19	GSM999012_A_Input_CD8.sga	CD8\|Input\|rep1	Input	GSM999012
20	GSM999013_C_Input_CD8.sga	CD8\|Input\|rep2	Input	GSM999013
21	GSM999014_E_Input_CD4.sga	CD4\|Input\|rep1	Input	GSM999014

Technical Notes

BED to SGA conversion was carried out using bed2sga.pl (ChIP-Seq v. 1.5.2).

References

Andersson R, Gebhard C, Miguel-Escalada I, Hoof I, Bornholdt J, Boyd M, Chen Y, Zhao X, Schmidl C, Suzuki T, Ntini E, Arner E, Valen E, Li K, Schwarzfischer L, Glatz D, Raithel J, Lilje B, Rapin N, Bagger FO, Jørgensen M, Andersen PR, Bertin N, Rackham O, Burroughs AM, Baillie JK, Ishizu Y, Shimizu Y, Furuhata E, Maeda S, Negishi Y, Mungall CJ, Meehan TF, Lassmann T, Itoh M, Kawaji H, Kondo N, Kawai J, Lennartsson A, Daub CO, Heutink P, Hume DA, Jensen TH, Suzuki H, Hayashizaki Y, Müller F, FANTOM Consortium, Forrest AR, Carninci P, Rehli M, Sandelin A
An atlas of active enhancers across human cell types and tissues. Nature. 2014 Mar 27;507(7493):455-61. doi: 10.1038/nature12787. 24670763
GEO series GSE40668: An atlas of in vivo transcribed enhancers in human primary cells

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Last update: 1 Oct 2018