DNase FAIRE data:
Filename | Description | Feature | GEO-ID | |
1 | GSM778663.sga | GM18486 - DNaseI | DNaseI | GSM778663 |
2 | GSM778664.sga | GM18498 - DNaseI | DNaseI | GSM778664 |
3 | GSM778665.sga | GM18499 - DNaseI | DNaseI | GSM778665 |
4 | GSM778666.sga | GM18501 - DNaseI | DNaseI | GSM778666 |
5 | GSM778667.sga | GM18502 - DNaseI | DNaseI | GSM778667 |
6 | GSM778668.sga | GM18504 - DNaseI | DNaseI | GSM778668 |
7 | GSM778669.sga | GM18505 - DNaseI | DNaseI | GSM778669 |
8 | GSM778670.sga | GM18507 - DNaseI | DNaseI | GSM778670 |
9 | GSM778671.sga | GM18508 - DNaseI | DNaseI | GSM778671 |
10 | GSM778672.sga | GM18510 - DNaseI | DNaseI | GSM778672 |
11 | GSM778673.sga | GM18511 - DNaseI | DNaseI | GSM778673 |
12 | GSM778674.sga | GM18516 - DNaseI | DNaseI | GSM778674 |
13 | GSM778675.sga | GM18517 - DNaseI | DNaseI | GSM778675 |
14 | GSM778676.sga | GM18519 - DNaseI | DNaseI | GSM778676 |
15 | GSM778677.sga | GM18520 - DNaseI | DNaseI | GSM778677 |
16 | GSM778678.sga | GM18522 - DNaseI | DNaseI | GSM778678 |
17 | GSM778679.sga | GM18852 - DNaseI | DNaseI | GSM778679 |
18 | GSM778680.sga | GM18853 - DNaseI | DNaseI | GSM778680 |
19 | GSM778681.sga | GM18855 - DNaseI | DNaseI | GSM778681 |
20 | GSM778682.sga | GM18856 - DNaseI | DNaseI | GSM778682 |
21 | GSM778683.sga | GM18858 - DNaseI | DNaseI | GSM778683 |
22 | GSM778684.sga | GM18859 - DNaseI | DNaseI | GSM778684 |
23 | GSM778685.sga | GM18861 - DNaseI | DNaseI | GSM778685 |
24 | GSM778686.sga | GM18862 - DNaseI | DNaseI | GSM778686 |
25 | GSM778687.sga | GM18870 - DNaseI | DNaseI | GSM778687 |
26 | GSM778688.sga | GM18907 - DNaseI | DNaseI | GSM778688 |
27 | GSM778689.sga | GM18909 - DNaseI | DNaseI | GSM778689 |
28 | GSM778690.sga | GM18912 - DNaseI | DNaseI | GSM778690 |
29 | GSM778691.sga | GM18913 - DNaseI | DNaseI | GSM778691 |
30 | GSM778692.sga | GM18916 - DNaseI | DNaseI | GSM778692 |
31 | GSM778693.sga | GM19092 - DNaseI | DNaseI | GSM778693 |
32 | GSM778694.sga | GM19093 - DNaseI | DNaseI | GSM778694 |
33 | GSM778695.sga | GM19098 - DNaseI | DNaseI | GSM778695 |
34 | GSM778696.sga | GM19099 - DNaseI | DNaseI | GSM778696 |
35 | GSM778697.sga | GM19101 - DNaseI | DNaseI | GSM778697 |
36 | GSM778698.sga | GM19114 - DNaseI | DNaseI | GSM778698 |
37 | GSM778699.sga | GM19116 - DNaseI | DNaseI | GSM778699 |
38 | GSM778700.sga | GM19119 - DNaseI | DNaseI | GSM778700 |
39 | GSM778701.sga | GM19127 - DNaseI | DNaseI | GSM778701 |
40 | GSM778702.sga | GM19130 - DNaseI | DNaseI | GSM778702 |
41 | GSM778703.sga | GM19131 - DNaseI | DNaseI | GSM778703 |
42 | GSM778704.sga | GM19137 - DNaseI | DNaseI | GSM778704 |
43 | GSM778705.sga | GM19138 - DNaseI | DNaseI | GSM778705 |
44 | GSM778706.sga | GM19140 - DNaseI | DNaseI | GSM778706 |
45 | GSM778707.sga | GM19141 - DNaseI | DNaseI | GSM778707 |
46 | GSM778708.sga | GM19143 - DNaseI | DNaseI | GSM778708 |
47 | GSM778709.sga | GM19144 - DNaseI | DNaseI | GSM778709 |
48 | GSM778710.sga | GM19147 - DNaseI | DNaseI | GSM778710 |
49 | GSM778711.sga | GM19152 - DNaseI | DNaseI | GSM778711 |
50 | GSM778712.sga | GM19153 - DNaseI | DNaseI | GSM778712 |
51 | GSM778713.sga | GM19159 - DNaseI | DNaseI | GSM778713 |
52 | GSM778714.sga | GM19160 - DNaseI | DNaseI | GSM778714 |
53 | GSM778715.sga | GM19171 - DNaseI | DNaseI | GSM778715 |
54 | GSM778716.sga | GM19190 - DNaseI | DNaseI | GSM778716 |
55 | GSM778717.sga | GM19192 - DNaseI | DNaseI | GSM778717 |
56 | GSM778718.sga | GM19193 - DNaseI | DNaseI | GSM778718 |
57 | GSM778719.sga | GM19200 - DNaseI | DNaseI | GSM778719 |
58 | GSM778720.sga | GM19201 - DNaseI | DNaseI | GSM778720 |
59 | GSM778721.sga | GM19203 - DNaseI | DNaseI | GSM778721 |
60 | GSM778722.sga | GM19204 - DNaseI | DNaseI | GSM778722 |
61 | GSM778723.sga | GM19206 - DNaseI | DNaseI | GSM778723 |
62 | GSM778724.sga | GM19207 - DNaseI | DNaseI | GSM778724 |
63 | GSM778725.sga | GM19209 - DNaseI | DNaseI | GSM778725 |
64 | GSM778726.sga | GM19210 - DNaseI | DNaseI | GSM778726 |
65 | GSM778727.sga | GM19222 - DNaseI | DNaseI | GSM778727 |
66 | GSM778728.sga | GM19223 - DNaseI | DNaseI | GSM778728 |
67 | GSM778729.sga | GM19225 - DNaseI | DNaseI | GSM778729 |
68 | GSM778730.sga | GM19238 - DNaseI | DNaseI | GSM778730 |
69 | GSM778731.sga | GM19239 - DNaseI | DNaseI | GSM778731 |
70 | GSM778732.sga | GM19257 - DNaseI | DNaseI | GSM778732 |
FASTQ files were extracted from SRA files using fastq-dump (SRA toolkit v2.5.0) and mapped to the genome using Bowtie v0.12.8. SAM files were then converted into bam using samtools v0.1.14 and to bed using bamToBed v2.12.0 (bedtools). SGA conversion was carried out using bed2sga.pl (ChIP-Seq v. 1.5.3).