Wang 2012, CTCF Binding Sites by ChIP-seq from ENCODE/University of Washington.
Description
This samples serie displays maps of genome-wide binding of the
CTCF transcription factor in different cell
lines and different conditions. Additional peak files are
also provided.
BAM files were converted to bed using bamToBed v2.12.0
(bedtools). SGA
conversion was carried out using the C program bed2sga
(ChIP-Seq v. 1.5.3).
References
Wang H, Maurano MT, Qu H, Varley KE, Gertz J, Pauli F, Lee K, Canfield T, Weaver M, Sandstrom R, Thurman RE, Kaul R, Myers RM, Stamatoyannopoulos JA Widespread plasticity in CTCF occupancy linked to DNA methylation.
Genome Res. 2012 Sep;22(9):1680-8. doi: 10.1101/gr.136101.111.
22955980
GEO series
GSE30263:
CTCF Binding Sites by ChIP-seq from ENCODE/University of Washington