The source data were downloaded from ENCODE at UCSC
ChIP-seq data:
| Filename | Description | Feature | GEO-ID | |
| 1 | EH000392_rep1.sga | GM06990|CTCF||UW rep1 | CTCF | GSM749708 |
| 2 | EH000392_rep2.sga | GM06990|CTCF||UW rep2 | CTCF | GSM749705 |
| 3 | EH000393_rep1.sga | GM12801|CTCF||UW rep1 | CTCF | GSM749711 |
| 4 | EH000394_rep1.sga | GM12878|CTCF||UW rep1 | CTCF | GSM749704 |
| 5 | EH000394_rep2.sga | GM12878|CTCF||UW rep2 | CTCF | GSM749706 |
| 6 | EH000396_rep1.sga | HEK293|CTCF||UW rep1 | CTCF | GSM749668 |
| 7 | EH000396_rep2.sga | HEK293|CTCF||UW rep2 | CTCF | GSM749687 |
| 8 | EH000397_rep1.sga | HL-60|CTCF||UW rep1 | CTCF | GSM749688 |
| 9 | EH000398_rep1.sga | HeLa-S3|CTCF||UW rep1 | CTCF | GSM749729 |
| 10 | EH000398_rep2.sga | HeLa-S3|CTCF||UW rep2 | CTCF | GSM749739 |
| 11 | EH000399_rep1.sga | K562|CTCF||UW rep1 | CTCF | GSM749690 |
| 12 | EH000399_rep2.sga | K562|CTCF||UW rep2 | CTCF | GSM749733 |
| 13 | EH000401_rep1.sga | HepG2|CTCF||UW rep1 | CTCF | GSM749715 |
| 14 | EH000401_rep2.sga | HepG2|CTCF||UW rep2 | CTCF | GSM749683 |
| 15 | EH000402_rep1.sga | WERI-Rb-1|CTCF||UW rep1 | CTCF | GSM749768 |
| 16 | EH000402_rep2.sga | WERI-Rb-1|CTCF||UW rep2 | CTCF | GSM749679 |
| 17 | EH000403_rep1.sga | BJ|CTCF||UW rep1 | CTCF | GSM749677 |
| 18 | EH000403_rep2.sga | BJ|CTCF||UW rep2 | CTCF | GSM749752 |
| 19 | EH000404_rep1.sga | Caco-2|CTCF||UW rep1 | CTCF | GSM749748 |
| 20 | EH000404_rep2.sga | Caco-2|CTCF||UW rep2 | CTCF | GSM749689 |
| 21 | EH000405_rep1.sga | HRE|CTCF||UW rep1 | CTCF | GSM749727 |
| 22 | EH000405_rep2.sga | HRE|CTCF||UW rep2 | CTCF | GSM749737 |
| 23 | EH000406_rep1.sga | NHEK|CTCF||UW rep1 | CTCF | GSM749707 |
| 24 | EH000406_rep2.sga | NHEK|CTCF||UW rep2 | CTCF | GSM749747 |
| 25 | EH000410_rep1.sga | HUVEC|CTCF||UW rep1 | CTCF | GSM749674 |
| 26 | EH000410_rep2.sga | HUVEC|CTCF||UW rep2 | CTCF | GSM749749 |
| 27 | EH000419_rep1.sga | HMEC|CTCF||UW rep1 | CTCF | GSM749753 |
| 28 | EH000419_rep2.sga | HMEC|CTCF||UW rep2 | CTCF | - |
| 29 | EH000437_rep1.sga | SAEC|CTCF||UW rep1 | CTCF | GSM749684 |
| 30 | EH000437_rep2.sga | SAEC|CTCF||UW rep2 | CTCF | GSM749779 |
| 31 | EH000439_rep1.sga | SK-N-SH_RA|CTCF||UW rep1 | CTCF | GSM749693 |
| 32 | EH000439_rep2.sga | SK-N-SH_RA|CTCF||UW rep2 | CTCF | GSM749667 |
| 33 | EH000447_rep1.sga | GM12864|CTCF||UW rep1 | CTCF | GSM749676 |
| 34 | EH000447_rep2.sga | GM12864|CTCF||UW rep2 | CTCF | GSM749762 |
| 35 | EH000447_rep3.sga | GM12864|CTCF||UW rep3 | CTCF | - |
| 36 | EH000448_rep1.sga | GM12865|CTCF||UW rep1 | CTCF | GSM749740 |
| 37 | EH000448_rep2.sga | GM12865|CTCF||UW rep2 | CTCF | GSM749725 |
| 38 | EH000448_rep3.sga | GM12865|CTCF||UW rep3 | CTCF | - |
| 39 | EH000449_rep1.sga | GM12872|CTCF||UW rep1 | CTCF | GSM749694 |
| 40 | EH000449_rep2.sga | GM12872|CTCF||UW rep2 | CTCF | GSM749692 |
| 41 | EH000449_rep3.sga | GM12872|CTCF||UW rep3 | CTCF | - |
| 42 | EH000450_rep1.sga | GM12873|CTCF||UW rep1 | CTCF | GSM749730 |
| 43 | EH000450_rep2.sga | GM12873|CTCF||UW rep2 | CTCF | GSM749686 |
| 44 | EH000450_rep3.sga | GM12873|CTCF||UW rep3 | CTCF | - |
| 45 | EH000451_rep1.sga | GM12874|CTCF||UW rep1 | CTCF | GSM749757 |
| 46 | EH000451_rep2.sga | GM12874|CTCF||UW rep2 | CTCF | GSM749741 |
| 47 | EH000452_rep1.sga | GM12875|CTCF||UW rep1 | CTCF | GSM749764 |
| 48 | EH000452_rep2.sga | GM12875|CTCF||UW rep2 | CTCF | GSM749670 |
| 49 | EH000975_rep1.sga | AG04449|CTCF||UW rep1 | CTCF | GSM749695 |
| 50 | EH000975_rep2.sga | AG04449|CTCF||UW rep2 | CTCF | GSM749678 |
| 51 | EH000976_rep1.sga | AG04450|CTCF||UW rep1 | CTCF | GSM749769 |
| 52 | EH000976_rep2.sga | AG04450|CTCF||UW rep2 | CTCF | - |
| 53 | EH000977_rep1.sga | AG09309|CTCF||UW rep1 | CTCF | GSM749750 |
| 54 | EH000977_rep2.sga | AG09309|CTCF||UW rep2 | CTCF | GSM749680 |
| 55 | EH000978_rep1.sga | AG09319|CTCF||UW rep1 | CTCF | GSM749728 |
| 56 | EH000978_rep2.sga | AG09319|CTCF||UW rep2 | CTCF | GSM749723 |
| 57 | EH000979_rep1.sga | AG10803|CTCF||UW rep1 | CTCF | GSM749714 |
| 58 | EH000979_rep2.sga | AG10803|CTCF||UW rep2 | CTCF | GSM749759 |
| 59 | EH000980_rep1.sga | AoAF|CTCF||UW rep1 | CTCF | GSM749666 |
| 60 | EH000980_rep2.sga | AoAF|CTCF||UW rep2 | CTCF | GSM749736 |
| 61 | EH000981_rep1.sga | HBMEC|CTCF||UW rep1 | CTCF | GSM749743 |
| 62 | EH000981_rep2.sga | HBMEC|CTCF||UW rep2 | CTCF | GSM749710 |
| 63 | EH000982_rep1.sga | HCFaa|CTCF||UW rep1 | CTCF | GSM749732 |
| 64 | EH000983_rep1.sga | HCPEpiC|CTCF||UW rep1 | CTCF | GSM749735 |
| 65 | EH000983_rep2.sga | HCPEpiC|CTCF||UW rep2 | CTCF | GSM749745 |
| 66 | EH000984_rep1.sga | HEEpiC|CTCF||UW rep1 | CTCF | GSM749712 |
| 67 | EH000984_rep2.sga | HEEpiC|CTCF||UW rep2 | CTCF | GSM749726 |
| 68 | EH000985_rep1.sga | HMF|CTCF||UW rep1 | CTCF | GSM749665 |
| 69 | EH000985_rep2.sga | HMF|CTCF||UW rep2 | CTCF | GSM749675 |
| 70 | EH000986_rep1.sga | HPAF|CTCF||UW rep1 | CTCF | GSM749681 |
| 71 | EH000986_rep2.sga | HPAF|CTCF||UW rep2 | CTCF | GSM749751 |
| 72 | EH000987_rep1.sga | HPF|CTCF||UW rep1 | CTCF | GSM749699 |
| 73 | EH000987_rep2.sga | HPF|CTCF||UW rep2 | CTCF | GSM749717 |
| 74 | EH000988_rep1.sga | HRPEpiC|CTCF||UW rep1 | CTCF | GSM749673 |
| 75 | EH000988_rep2.sga | HRPEpiC|CTCF||UW rep2 | CTCF | - |
| 76 | EH000989_rep1.sga | HA-sp|CTCF||UW rep1 | CTCF | GSM749696 |
| 77 | EH000989_rep2.sga | HA-sp|CTCF||UW rep2 | CTCF | - |
| 78 | EH001890_rep1.sga | A549|CTCF||UW rep1 | CTCF | - |
| 79 | EH001890_rep2.sga | A549|CTCF||UW rep2 | CTCF | - |
| 80 | EH001891_rep1.sga | BE2_C|CTCF||UW rep1 | CTCF | - |
| 81 | EH001891_rep2.sga | BE2_C|CTCF||UW rep2 | CTCF | - |
| 82 | EH001893_rep1.sga | HAc|CTCF||UW rep1 | CTCF | - |
| 83 | EH001893_rep2.sga | HAc|CTCF||UW rep2 | CTCF | - |
| 84 | EH001894_rep1.sga | HCM|CTCF||UW rep1 | CTCF | - |
| 85 | EH001894_rep2.sga | HCM|CTCF||UW rep2 | CTCF | - |
| 86 | EH001895_rep1.sga | HFF-Myc|CTCF||UW rep1 | CTCF | - |
| 87 | EH001895_rep2.sga | HFF-Myc|CTCF||UW rep2 | CTCF | - |
| 88 | EH001898_rep1.sga | NB4|CTCF||UW rep1 | CTCF | - |
| 89 | EH001902_rep1.sga | WI-38|CTCF||UW rep1 | CTCF | - |
| 90 | EH001902_rep2.sga | WI-38|CTCF||UW rep2 | CTCF | - |
| 91 | EH002049_rep1.sga | GM12866|CTCF||UW rep1 | CTCF | - |
| 92 | EH002049_rep2.sga | GM12866|CTCF||UW rep2 | CTCF | - |
| 93 | EH002050_rep1.sga | GM12867|CTCF||UW rep1 | CTCF | - |
| 94 | EH002050_rep2.sga | GM12867|CTCF||UW rep2 | CTCF | - |
| 95 | EH002051_rep1.sga | GM12868|CTCF||UW rep1 | CTCF | - |
| 96 | EH002051_rep2.sga | GM12868|CTCF||UW rep2 | CTCF | - |
| 97 | EH002052_rep1.sga | GM12869|CTCF||UW rep1 | CTCF | - |
| 98 | EH002052_rep2.sga | GM12869|CTCF||UW rep2 | CTCF | - |
| 99 | EH002053_rep1.sga | GM12870|CTCF||UW rep1 | CTCF | - |
| 100 | EH002053_rep2.sga | GM12870|CTCF||UW rep2 | CTCF | - |
| 101 | EH002054_rep1.sga | GM12871|CTCF||UW rep1 | CTCF | - |
| 102 | EH002054_rep2.sga | GM12871|CTCF||UW rep2 | CTCF | - |
| 103 | EH002055_rep1.sga | HCT-116|CTCF||UW rep1 | CTCF | - |
| 104 | EH002055_rep2.sga | HCT-116|CTCF||UW rep2 | CTCF | - |
| 105 | EH002056_rep1.sga | HVMF|CTCF||UW rep1 | CTCF | - |
| 106 | EH002056_rep2.sga | HVMF|CTCF||UW rep2 | CTCF | - |
| 107 | EH002057_rep1.sga | MCF-7|CTCF||UW rep1 | CTCF | - |
| 108 | EH002057_rep2.sga | MCF-7|CTCF||UW rep2 | CTCF | - |
| 109 | EH002058_rep1.sga | NHDF-neo|CTCF||UW rep1 | CTCF | - |
| 110 | EH002058_rep2.sga | NHDF-neo|CTCF||UW rep2 | CTCF | - |
| 111 | EH002059_rep1.sga | RPTEC|CTCF||UW rep1 | CTCF | - |
| 112 | EH002059_rep2.sga | RPTEC|CTCF||UW rep2 | CTCF | - |
| 113 | EH002547_rep1.sga | HFF|CTCF||UW rep1 | CTCF | - |
| 114 | EH002548_rep1.sga | NHLF|CTCF||UW rep1 | CTCF | - |
| 115 | EH000453_rep1.sga | BJ|Input||UW rep1 | Input | GSM749770 |
| 116 | EH000454_rep1.sga | Caco-2|Input||UW rep1 | Input | GSM749691 |
| 117 | EH000455_rep1.sga | GM06990|Input||UW rep1 | Input | GSM749731 |
| 118 | EH000456_rep1.sga | GM12801|Input||UW rep1 | Input | GSM749701 |
| 119 | EH000457_rep1.sga | GM12864|Input||UW rep1 | Input | GSM749754 |
| 120 | EH000458_rep1.sga | GM12865|Input||UW rep1 | Input | GSM749777 |
| 121 | EH000459_rep1.sga | GM12872|Input||UW rep1 | Input | GSM749765 |
| 122 | EH000460_rep1.sga | GM12873|Input||UW rep1 | Input | GSM749685 |
| 123 | EH000461_rep1.sga | GM12874|Input||UW rep1 | Input | GSM749742 |
| 124 | EH000462_rep1.sga | GM12875|Input||UW rep1 | Input | GSM749724 |
| 125 | EH000463_rep1.sga | GM12878|Input||UW rep1 | Input | GSM749669 |
| 126 | EH000464_rep1.sga | HEK293|Input||UW rep1 | Input | GSM749767 |
| 127 | EH000465_rep1.sga | HL-60|Input||UW rep1 | Input | GSM749775 |
| 128 | EH000466_rep1.sga | HMEC|Input||UW rep1 | Input | GSM749755 |
| 129 | EH000467_rep1.sga | HRE|Input||UW rep1 | Input | GSM749778 |
| 130 | EH000468_rep1.sga | HUVEC|Input||UW rep1 | Input | GSM749758 |
| 131 | EH000469_rep1.sga | HeLa-S3|Input||UW rep1 | Input | GSM749721 |
| 132 | EH000470_rep1.sga | HepG2|Input||UW rep1 | Input | GSM749756 |
| 133 | EH000471_rep1.sga | K562|Input||UW rep1 | Input | GSM749719 |
| 134 | EH000472_rep1.sga | NHEK|Input||UW rep1 | Input | GSM749744 |
| 135 | EH000473_rep1.sga | SAEC|Input||UW rep1 | Input | GSM749682 |
| 136 | EH000474_rep1.sga | SK-N-SH_RA|Input||UW rep1 | Input | GSM749700 |
| 137 | EH000475_rep1.sga | WERI-Rb-1|Input||UW rep1 | Input | GSM749766 |
| 138 | EH000928_rep1.sga | AG04449|Input||UW rep1 | Input | GSM749702 |
| 139 | EH000930_rep1.sga | AG04450|Input||UW rep1 | Input | GSM749697 |
| 140 | EH000932_rep1.sga | AG09309|Input||UW rep1 | Input | GSM749718 |
| 141 | EH000934_rep1.sga | AG09319|Input||UW rep1 | Input | GSM749671 |
| 142 | EH000936_rep1.sga | AG10803|Input||UW rep1 | Input | GSM749734 |
| 143 | EH000938_rep1.sga | AoAF|Input||UW rep1 | Input | GSM749772 |
| 144 | EH000940_rep1.sga | HBMEC|Input||UW rep1 | Input | GSM749746 |
| 145 | EH000942_rep1.sga | HCF|Input||UW rep1 | Input | GSM749713 |
| 146 | EH000944_rep1.sga | HCFaa|Input||UW rep1 | Input | GSM749761 |
| 147 | EH000946_rep1.sga | HCM|Input||UW rep1 | Input | GSM749738 |
| 148 | EH000948_rep1.sga | HCPEpiC|Input||UW rep1 | Input | GSM749776 |
| 149 | EH000950_rep1.sga | HCT-116|Input||UW rep1 | Input | GSM749774 |
| 150 | EH000952_rep1.sga | HEEpiC|Input||UW rep1 | Input | GSM749698 |
| 151 | EH000956_rep1.sga | HMF|Input||UW rep1 | Input | GSM749763 |
| 152 | EH000958_rep1.sga | HPAF|Input||UW rep1 | Input | GSM749709 |
| 153 | EH000960_rep1.sga | HPF|Input||UW rep1 | Input | GSM749773 |
| 154 | EH000962_rep1.sga | HRPEpiC|Input||UW rep1 | Input | GSM749771 |
| 155 | EH000964_rep1.sga | HVMF|Input||UW rep1 | Input | GSM749703 |
| 156 | EH000966_rep1.sga | Jurkat|Input||UW rep1 | Input | GSM749672 |
| 157 | EH000968_rep1.sga | MCF-7|Input||UW rep1 | Input | GSM749760 |
| 158 | EH000970_rep1.sga | NB4|Input||UW rep1 | Input | GSM749716 |
| 159 | EH000972_rep1.sga | NHDF-neo|Input||UW rep1 | Input | GSM749722 |
| 160 | EH000974_rep1.sga | HA-sp|Input||UW rep1 | Input | GSM749720 |
| 161 | EH001892_rep1.sga | BE2_C|Input||UW rep1 | Input | - |
| 162 | EH001896_rep1.sga | HFF-Myc|Input||UW rep1 | Input | - |
| 163 | EH001897_rep1.sga | LNCaP|Input||UW rep1 | Input | - |
| 164 | EH001899_rep1.sga | NHLF|Input||UW rep1 | Input | - |
| 165 | EH001900_rep1.sga | PANC-1|Input||UW rep1 | Input | - |
| 166 | EH001901_rep1.sga | SK-N-MC|Input||UW rep1 | Input | - |
| 167 | EH001903_rep1.sga | WI-38|Input||UW rep1 | Input | - |
| 168 | EH001904_rep1.sga | A549|Input||UW rep1 | Input | - |
| 169 | EH002043_rep1.sga | HFF|Input||UW rep1 | Input | - |
| 170 | EH002045_rep1.sga | RPTEC|Input||UW rep1 | Input | - |
| 171 | EH002048_rep1.sga | WI-38|Input|4OHTAM_20nM_72hr|UW rep1 | Input | - |
| 172 | EH002165_rep1.sga | HAc|Input||UW rep1 | Input | - |
| 173 | EH002169_rep1.sga | Monocytes-CD14+_RO01746|Input||UW rep1 | Input | - |
| 174 | EH002170_rep1.sga | CD20+_RO01778|Input||UW rep1 | Input | - |
| 175 | EH002172_rep1.sga | CD20+_RO01794|Input||UW rep1 | Input | - |
| 176 | EH002173_rep1.sga | SKMC|Input||UW rep1 | Input | - |
| 177 | EH002532_rep1.sga | H7-hESC|Input|diffProtA_14d|UW rep1 | Input | - |
| 178 | EH002543_rep1.sga | H7-hESC|Input|diffProtA_2d|UW rep1 | Input | - |
| 179 | EH002544_rep1.sga | H7-hESC|Input|diffProtA_5d|UW rep1 | Input | - |
| 180 | EH002545_rep1.sga | H7-hESC|Input|diffProtA_9d|UW rep1 | Input | - |
ChIP-seq peaks files:
| Filename | Description | Feature | GEO-ID | |
| 1 | EH000392_narrowPeak_rep1.sga | GM06990|CTCF narrowPeak||UW rep1 | CTCF_P | GSM749708 |
| 2 | EH000392_narrowPeak_rep2.sga | GM06990|CTCF narrowPeak||UW rep2 | CTCF_P | GSM749705 |
| 3 | EH000393_narrowPeak_rep1.sga | GM12801|CTCF narrowPeak||UW rep1 | CTCF_P | GSM749711 |
| 4 | EH000394_narrowPeak_rep1.sga | GM12878|CTCF narrowPeak||UW rep1 | CTCF_P | GSM749704 |
| 5 | EH000394_narrowPeak_rep2.sga | GM12878|CTCF narrowPeak||UW rep2 | CTCF_P | GSM749706 |
| 6 | EH000396_narrowPeak_rep1.sga | HEK293|CTCF narrowPeak||UW rep1 | CTCF_P | GSM749668 |
| 7 | EH000396_narrowPeak_rep2.sga | HEK293|CTCF narrowPeak||UW rep2 | CTCF_P | GSM749687 |
| 8 | EH000397_narrowPeak_rep1.sga | HL-60|CTCF narrowPeak||UW rep1 | CTCF_P | GSM749688 |
| 9 | EH000398_narrowPeak_rep1.sga | HeLa-S3|CTCF narrowPeak||UW rep1 | CTCF_P | GSM749729 |
| 10 | EH000398_narrowPeak_rep2.sga | HeLa-S3|CTCF narrowPeak||UW rep2 | CTCF_P | GSM749739 |
| 11 | EH000399_narrowPeak_rep1.sga | K562|CTCF narrowPeak||UW rep1 | CTCF_P | GSM749690 |
| 12 | EH000399_narrowPeak_rep2.sga | K562|CTCF narrowPeak||UW rep2 | CTCF_P | GSM749733 |
| 13 | EH000401_narrowPeak_rep1.sga | HepG2|CTCF narrowPeak||UW rep1 | CTCF_P | GSM749715 |
| 14 | EH000401_narrowPeak_rep2.sga | HepG2|CTCF narrowPeak||UW rep2 | CTCF_P | GSM749683 |
| 15 | EH000402_narrowPeak_rep1.sga | WERI-Rb-1|CTCF narrowPeak||UW rep1 | CTCF_P | GSM749768 |
| 16 | EH000402_narrowPeak_rep2.sga | WERI-Rb-1|CTCF narrowPeak||UW rep2 | CTCF_P | GSM749679 |
| 17 | EH000403_narrowPeak_rep1.sga | BJ|CTCF narrowPeak||UW rep1 | CTCF_P | GSM749677 |
| 18 | EH000403_narrowPeak_rep2.sga | BJ|CTCF narrowPeak||UW rep2 | CTCF_P | GSM749752 |
| 19 | EH000404_narrowPeak_rep1.sga | Caco-2|CTCF narrowPeak||UW rep1 | CTCF_P | GSM749748 |
| 20 | EH000404_narrowPeak_rep2.sga | Caco-2|CTCF narrowPeak||UW rep2 | CTCF_P | GSM749689 |
| 21 | EH000405_narrowPeak_rep1.sga | HRE|CTCF narrowPeak||UW rep1 | CTCF_P | GSM749727 |
| 22 | EH000405_narrowPeak_rep2.sga | HRE|CTCF narrowPeak||UW rep2 | CTCF_P | GSM749737 |
| 23 | EH000406_narrowPeak_rep1.sga | NHEK|CTCF narrowPeak||UW rep1 | CTCF_P | GSM749707 |
| 24 | EH000406_narrowPeak_rep2.sga | NHEK|CTCF narrowPeak||UW rep2 | CTCF_P | GSM749747 |
| 25 | EH000410_narrowPeak_rep1.sga | HUVEC|CTCF narrowPeak||UW rep1 | CTCF_P | GSM749674 |
| 26 | EH000410_narrowPeak_rep2.sga | HUVEC|CTCF narrowPeak||UW rep2 | CTCF_P | GSM749749 |
| 27 | EH000419_narrowPeak_rep1.sga | HMEC|CTCF narrowPeak||UW rep1 | CTCF_P | GSM749753 |
| 28 | EH000419_narrowPeak_rep2.sga | HMEC|CTCF narrowPeak||UW rep2 | CTCF_P | GSM1022631 |
| 29 | EH000437_narrowPeak_rep1.sga | SAEC|CTCF narrowPeak||UW rep1 | CTCF_P | GSM749684 |
| 30 | EH000437_narrowPeak_rep2.sga | SAEC|CTCF narrowPeak||UW rep2 | CTCF_P | GSM749779 |
| 31 | EH000439_narrowPeak_rep1.sga | SK-N-SH_RA|CTCF narrowPeak||UW rep1 | CTCF_P | GSM749693 |
| 32 | EH000439_narrowPeak_rep2.sga | SK-N-SH_RA|CTCF narrowPeak||UW rep2 | CTCF_P | GSM749667 |
| 33 | EH000447_narrowPeak_rep1.sga | GM12864|CTCF narrowPeak||UW rep1 | CTCF_P | GSM749676 |
| 34 | EH000447_narrowPeak_rep2.sga | GM12864|CTCF narrowPeak||UW rep2 | CTCF_P | GSM749762 |
| 35 | EH000447_narrowPeak_rep3.sga | GM12864|CTCF narrowPeak||UW rep3 | CTCF_P | GSM1022664 |
| 36 | EH000448_narrowPeak_rep1.sga | GM12865|CTCF narrowPeak||UW rep1 | CTCF_P | GSM749740 |
| 37 | EH000448_narrowPeak_rep2.sga | GM12865|CTCF narrowPeak||UW rep2 | CTCF_P | GSM749725 |
| 38 | EH000448_narrowPeak_rep3.sga | GM12865|CTCF narrowPeak||UW rep3 | CTCF_P | GSM1022636 |
| 39 | EH000449_narrowPeak_rep1.sga | GM12872|CTCF narrowPeak||UW rep1 | CTCF_P | GSM749694 |
| 40 | EH000449_narrowPeak_rep2.sga | GM12872|CTCF narrowPeak||UW rep2 | CTCF_P | GSM749692 |
| 41 | EH000449_narrowPeak_rep3.sga | GM12872|CTCF narrowPeak||UW rep3 | CTCF_P | GSM1022633 |
| 42 | EH000450_narrowPeak_rep1.sga | GM12873|CTCF narrowPeak||UW rep1 | CTCF_P | GSM749730 |
| 43 | EH000450_narrowPeak_rep2.sga | GM12873|CTCF narrowPeak||UW rep2 | CTCF_P | GSM749686 |
| 44 | EH000450_narrowPeak_rep3.sga | GM12873|CTCF narrowPeak||UW rep3 | CTCF_P | GSM1022629 |
| 45 | EH000451_narrowPeak_rep1.sga | GM12874|CTCF narrowPeak||UW rep1 | CTCF_P | GSM749757 |
| 46 | EH000451_narrowPeak_rep2.sga | GM12874|CTCF narrowPeak||UW rep2 | CTCF_P | GSM749741 |
| 47 | EH000452_narrowPeak_rep1.sga | GM12875|CTCF narrowPeak||UW rep1 | CTCF_P | GSM749764 |
| 48 | EH000452_narrowPeak_rep2.sga | GM12875|CTCF narrowPeak||UW rep2 | CTCF_P | GSM749670 |
| 49 | EH000975_narrowPeak_rep1.sga | AG04449|CTCF narrowPeak||UW rep1 | CTCF_P | GSM749695 |
| 50 | EH000975_narrowPeak_rep2.sga | AG04449|CTCF narrowPeak||UW rep2 | CTCF_P | GSM749678 |
| 51 | EH000976_narrowPeak_rep1.sga | AG04450|CTCF narrowPeak||UW rep1 | CTCF_P | GSM749769 |
| 52 | EH000976_narrowPeak_rep2.sga | AG04450|CTCF narrowPeak||UW rep2 | CTCF_P | GSM1022635 |
| 53 | EH000977_narrowPeak_rep1.sga | AG09309|CTCF narrowPeak||UW rep1 | CTCF_P | GSM749750 |
| 54 | EH000977_narrowPeak_rep2.sga | AG09309|CTCF narrowPeak||UW rep2 | CTCF_P | GSM749680 |
| 55 | EH000978_narrowPeak_rep1.sga | AG09319|CTCF narrowPeak||UW rep1 | CTCF_P | GSM749728 |
| 56 | EH000978_narrowPeak_rep2.sga | AG09319|CTCF narrowPeak||UW rep2 | CTCF_P | GSM749723 |
| 57 | EH000979_narrowPeak_rep1.sga | AG10803|CTCF narrowPeak||UW rep1 | CTCF_P | GSM749714 |
| 58 | EH000979_narrowPeak_rep2.sga | AG10803|CTCF narrowPeak||UW rep2 | CTCF_P | GSM749759 |
| 59 | EH000980_narrowPeak_rep1.sga | AoAF|CTCF narrowPeak||UW rep1 | CTCF_P | GSM749666 |
| 60 | EH000980_narrowPeak_rep2.sga | AoAF|CTCF narrowPeak||UW rep2 | CTCF_P | GSM749736 |
| 61 | EH000981_narrowPeak_rep1.sga | HBMEC|CTCF narrowPeak||UW rep1 | CTCF_P | GSM749743 |
| 62 | EH000981_narrowPeak_rep2.sga | HBMEC|CTCF narrowPeak||UW rep2 | CTCF_P | GSM749710 |
| 63 | EH000982_narrowPeak_rep1.sga | HCFaa|CTCF narrowPeak||UW rep1 | CTCF_P | GSM749732 |
| 64 | EH000983_narrowPeak_rep1.sga | HCPEpiC|CTCF narrowPeak||UW rep1 | CTCF_P | GSM749735 |
| 65 | EH000983_narrowPeak_rep2.sga | HCPEpiC|CTCF narrowPeak||UW rep2 | CTCF_P | GSM749745 |
| 66 | EH000984_narrowPeak_rep1.sga | HEEpiC|CTCF narrowPeak||UW rep1 | CTCF_P | GSM749712 |
| 67 | EH000984_narrowPeak_rep2.sga | HEEpiC|CTCF narrowPeak||UW rep2 | CTCF_P | GSM749726 |
| 68 | EH000985_narrowPeak_rep1.sga | HMF|CTCF narrowPeak||UW rep1 | CTCF_P | GSM749665 |
| 69 | EH000985_narrowPeak_rep2.sga | HMF|CTCF narrowPeak||UW rep2 | CTCF_P | GSM749675 |
| 70 | EH000986_narrowPeak_rep1.sga | HPAF|CTCF narrowPeak||UW rep1 | CTCF_P | GSM749681 |
| 71 | EH000986_narrowPeak_rep2.sga | HPAF|CTCF narrowPeak||UW rep2 | CTCF_P | GSM749751 |
| 72 | EH000987_narrowPeak_rep1.sga | HPF|CTCF narrowPeak||UW rep1 | CTCF_P | GSM749699 |
| 73 | EH000987_narrowPeak_rep2.sga | HPF|CTCF narrowPeak||UW rep2 | CTCF_P | GSM749717 |
| 74 | EH000988_narrowPeak_rep1.sga | HRPEpiC|CTCF narrowPeak||UW rep1 | CTCF_P | GSM749673 |
| 75 | EH000988_narrowPeak_rep2.sga | HRPEpiC|CTCF narrowPeak||UW rep2 | CTCF_P | GSM1022665 |
| 76 | EH000989_narrowPeak_rep1.sga | HA-sp|CTCF narrowPeak||UW rep1 | CTCF_P | GSM749696 |
| 77 | EH000989_narrowPeak_rep2.sga | HA-sp|CTCF narrowPeak||UW rep2 | CTCF_P | GSM1022668 |
| 78 | EH001890_narrowPeak_rep1.sga | A549|CTCF narrowPeak||UW rep1 | CTCF_P | GSM1022640 |
| 79 | EH001890_narrowPeak_rep2.sga | A549|CTCF narrowPeak||UW rep2 | CTCF_P | GSM1022639 |
| 80 | EH001891_narrowPeak_rep1.sga | BE2_C|CTCF narrowPeak||UW rep1 | CTCF_P | GSM1022653 |
| 81 | EH001891_narrowPeak_rep2.sga | BE2_C|CTCF narrowPeak||UW rep2 | CTCF_P | GSM1022650 |
| 82 | EH001893_narrowPeak_rep1.sga | HAc|CTCF narrowPeak||UW rep1 | CTCF_P | GSM1022661 |
| 83 | EH001893_narrowPeak_rep2.sga | HAc|CTCF narrowPeak||UW rep2 | CTCF_P | GSM1022662 |
| 84 | EH001894_narrowPeak_rep1.sga | HCM|CTCF narrowPeak||UW rep1 | CTCF_P | GSM1022657 |
| 85 | EH001894_narrowPeak_rep2.sga | HCM|CTCF narrowPeak||UW rep2 | CTCF_P | GSM1022677 |
| 86 | EH001895_narrowPeak_rep1.sga | HFF-Myc|CTCF narrowPeak||UW rep1 | CTCF_P | GSM1022671 |
| 87 | EH001895_narrowPeak_rep2.sga | HFF-Myc|CTCF narrowPeak||UW rep2 | CTCF_P | GSM1022669 |
| 88 | EH001898_narrowPeak_rep1.sga | NB4|CTCF narrowPeak||UW rep1 | CTCF_P | GSM1022643 |
| 89 | EH001902_narrowPeak_rep1.sga | WI-38|CTCF narrowPeak||UW rep1 | CTCF_P | GSM1022637 |
| 90 | EH001902_narrowPeak_rep2.sga | WI-38|CTCF narrowPeak||UW rep2 | CTCF_P | GSM1022634 |
| 91 | EH002049_narrowPeak_rep1.sga | GM12866|CTCF narrowPeak||UW rep1 | CTCF_P | GSM849305 |
| 92 | EH002049_narrowPeak_rep2.sga | GM12866|CTCF narrowPeak||UW rep2 | CTCF_P | GSM849305 |
| 93 | EH002050_narrowPeak_rep1.sga | GM12867|CTCF narrowPeak||UW rep1 | CTCF_P | GSM849301 |
| 94 | EH002050_narrowPeak_rep2.sga | GM12867|CTCF narrowPeak||UW rep2 | CTCF_P | GSM849301 |
| 95 | EH002051_narrowPeak_rep1.sga | GM12868|CTCF narrowPeak||UW rep1 | CTCF_P | GSM849300 |
| 96 | EH002051_narrowPeak_rep2.sga | GM12868|CTCF narrowPeak||UW rep2 | CTCF_P | GSM849300 |
| 97 | EH002052_narrowPeak_rep1.sga | GM12869|CTCF narrowPeak||UW rep1 | CTCF_P | GSM849303 |
| 98 | EH002052_narrowPeak_rep2.sga | GM12869|CTCF narrowPeak||UW rep2 | CTCF_P | GSM849303 |
| 99 | EH002053_narrowPeak_rep1.sga | GM12870|CTCF narrowPeak||UW rep1 | CTCF_P | GSM849302 |
| 100 | EH002053_narrowPeak_rep2.sga | GM12870|CTCF narrowPeak||UW rep2 | CTCF_P | GSM849302 |
| 101 | EH002054_narrowPeak_rep1.sga | GM12871|CTCF narrowPeak||UW rep1 | CTCF_P | GSM849304 |
| 102 | EH002054_narrowPeak_rep2.sga | GM12871|CTCF narrowPeak||UW rep2 | CTCF_P | GSM849304 |
| 103 | EH002055_narrowPeak_rep1.sga | HCT-116|CTCF narrowPeak||UW rep1 | CTCF_P | GSM1022652 |
| 104 | EH002055_narrowPeak_rep2.sga | HCT-116|CTCF narrowPeak||UW rep2 | CTCF_P | GSM1022651 |
| 105 | EH002056_narrowPeak_rep1.sga | HVMF|CTCF narrowPeak||UW rep1 | CTCF_P | GSM1022630 |
| 106 | EH002056_narrowPeak_rep2.sga | HVMF|CTCF narrowPeak||UW rep2 | CTCF_P | GSM1022628 |
| 107 | EH002057_narrowPeak_rep1.sga | MCF-7|CTCF narrowPeak||UW rep1 | CTCF_P | GSM1022658 |
| 108 | EH002057_narrowPeak_rep2.sga | MCF-7|CTCF narrowPeak||UW rep2 | CTCF_P | GSM1022663 |
| 109 | EH002058_narrowPeak_rep1.sga | NHDF-neo|CTCF narrowPeak||UW rep1 | CTCF_P | GSM1022675 |
| 110 | EH002058_narrowPeak_rep2.sga | NHDF-neo|CTCF narrowPeak||UW rep2 | CTCF_P | GSM1022676 |
| 111 | EH002059_narrowPeak_rep1.sga | RPTEC|CTCF narrowPeak||UW rep1 | CTCF_P | GSM1022667 |
| 112 | EH002059_narrowPeak_rep2.sga | RPTEC|CTCF narrowPeak||UW rep2 | CTCF_P | GSM1022666 |
| 113 | EH002547_narrowPeak_rep1.sga | HFF|CTCF narrowPeak||UW rep1 | CTCF_P | GSM1022644 |
| 114 | EH002548_narrowPeak_rep1.sga | NHLF|CTCF narrowPeak||UW rep1 | CTCF_P | GSM1022626 |
All sample information was derived from a file named "files.txt" downloaded from the above-indicated URL. This file contains a list of filenames long with annotation (metadata). The sample descriptions provided here include cell type, ChIP-seq target (transcription factor), treatment and replicate. Cell types and treatments were transferred from ENCODE annotation as such without any editing.
The sample descriptions provided here were required to be unique across all ENCODE data series of the MGA repository. For this reason, the name of the data contributing lab is always indicated in the replicate field. Note further that the names of the local data files contain as first part the experiment identifier (dccAccession) extracted from the ENCODE annotation file. This identifier makes it possible to match a data file from this series to the corresponding peak list in hg19/encode/Uniform_TFBS.
More information about cell lines, antibodies, treatments, protocols, etc. can be found at https://genome.ucsc.edu/encode/otherTerms.html.
The peak files contain in the optional sixth field a positive real number reflecting the overall enrichment of the ChIP-seq signal in the peak region.
Files with a non-empty objectStatus in the file list provided by UCSC were not considered. BAM files were converted into BED using bamToBed (bedtools v2.27.0) and subsequently converted into SGA using bed2sga ( ChIP-Seq v. 1.5.3). Peak files in narrowPeak format were converted into SGA using bed2sga with options --narrowPeak -e 7.