CTCF Binding Sites by ChIP-seq from ENCODE/University of Washington.


ChIP-seq data against CTCF in many different cell types, produced by University of Washington as part of the ENCODE project.

The source data were downloaded from ENCODE at UCSC



From H. sapiens (Feb 2009 GRCh37/hg19).

ChIP-seq data:

Filename Description Feature GEO-ID
1 EH000392_rep1.sga GM06990|CTCF||UW rep1 CTCF GSM749708
2 EH000392_rep2.sga GM06990|CTCF||UW rep2 CTCF GSM749705
3 EH000393_rep1.sga GM12801|CTCF||UW rep1 CTCF GSM749711
4 EH000394_rep1.sga GM12878|CTCF||UW rep1 CTCF GSM749704
5 EH000394_rep2.sga GM12878|CTCF||UW rep2 CTCF GSM749706
6 EH000396_rep1.sga HEK293|CTCF||UW rep1 CTCF GSM749668
7 EH000396_rep2.sga HEK293|CTCF||UW rep2 CTCF GSM749687
8 EH000397_rep1.sga HL-60|CTCF||UW rep1 CTCF GSM749688
9 EH000398_rep1.sga HeLa-S3|CTCF||UW rep1 CTCF GSM749729
10 EH000398_rep2.sga HeLa-S3|CTCF||UW rep2 CTCF GSM749739
11 EH000399_rep1.sga K562|CTCF||UW rep1 CTCF GSM749690
12 EH000399_rep2.sga K562|CTCF||UW rep2 CTCF GSM749733
13 EH000401_rep1.sga HepG2|CTCF||UW rep1 CTCF GSM749715
14 EH000401_rep2.sga HepG2|CTCF||UW rep2 CTCF GSM749683
15 EH000402_rep1.sga WERI-Rb-1|CTCF||UW rep1 CTCF GSM749768
16 EH000402_rep2.sga WERI-Rb-1|CTCF||UW rep2 CTCF GSM749679
17 EH000403_rep1.sga BJ|CTCF||UW rep1 CTCF GSM749677
18 EH000403_rep2.sga BJ|CTCF||UW rep2 CTCF GSM749752
19 EH000404_rep1.sga Caco-2|CTCF||UW rep1 CTCF GSM749748
20 EH000404_rep2.sga Caco-2|CTCF||UW rep2 CTCF GSM749689
21 EH000405_rep1.sga HRE|CTCF||UW rep1 CTCF GSM749727
22 EH000405_rep2.sga HRE|CTCF||UW rep2 CTCF GSM749737
23 EH000406_rep1.sga NHEK|CTCF||UW rep1 CTCF GSM749707
24 EH000406_rep2.sga NHEK|CTCF||UW rep2 CTCF GSM749747
25 EH000410_rep1.sga HUVEC|CTCF||UW rep1 CTCF GSM749674
26 EH000410_rep2.sga HUVEC|CTCF||UW rep2 CTCF GSM749749
27 EH000419_rep1.sga HMEC|CTCF||UW rep1 CTCF GSM749753
28 EH000419_rep2.sga HMEC|CTCF||UW rep2 CTCF -
29 EH000437_rep1.sga SAEC|CTCF||UW rep1 CTCF GSM749684
30 EH000437_rep2.sga SAEC|CTCF||UW rep2 CTCF GSM749779
31 EH000439_rep1.sga SK-N-SH_RA|CTCF||UW rep1 CTCF GSM749693
32 EH000439_rep2.sga SK-N-SH_RA|CTCF||UW rep2 CTCF GSM749667
33 EH000447_rep1.sga GM12864|CTCF||UW rep1 CTCF GSM749676
34 EH000447_rep2.sga GM12864|CTCF||UW rep2 CTCF GSM749762
35 EH000447_rep3.sga GM12864|CTCF||UW rep3 CTCF -
36 EH000448_rep1.sga GM12865|CTCF||UW rep1 CTCF GSM749740
37 EH000448_rep2.sga GM12865|CTCF||UW rep2 CTCF GSM749725
38 EH000448_rep3.sga GM12865|CTCF||UW rep3 CTCF -
39 EH000449_rep1.sga GM12872|CTCF||UW rep1 CTCF GSM749694
40 EH000449_rep2.sga GM12872|CTCF||UW rep2 CTCF GSM749692
41 EH000449_rep3.sga GM12872|CTCF||UW rep3 CTCF -
42 EH000450_rep1.sga GM12873|CTCF||UW rep1 CTCF GSM749730
43 EH000450_rep2.sga GM12873|CTCF||UW rep2 CTCF GSM749686
44 EH000450_rep3.sga GM12873|CTCF||UW rep3 CTCF -
45 EH000451_rep1.sga GM12874|CTCF||UW rep1 CTCF GSM749757
46 EH000451_rep2.sga GM12874|CTCF||UW rep2 CTCF GSM749741
47 EH000452_rep1.sga GM12875|CTCF||UW rep1 CTCF GSM749764
48 EH000452_rep2.sga GM12875|CTCF||UW rep2 CTCF GSM749670
49 EH000975_rep1.sga AG04449|CTCF||UW rep1 CTCF GSM749695
50 EH000975_rep2.sga AG04449|CTCF||UW rep2 CTCF GSM749678
51 EH000976_rep1.sga AG04450|CTCF||UW rep1 CTCF GSM749769
52 EH000976_rep2.sga AG04450|CTCF||UW rep2 CTCF -
53 EH000977_rep1.sga AG09309|CTCF||UW rep1 CTCF GSM749750
54 EH000977_rep2.sga AG09309|CTCF||UW rep2 CTCF GSM749680
55 EH000978_rep1.sga AG09319|CTCF||UW rep1 CTCF GSM749728
56 EH000978_rep2.sga AG09319|CTCF||UW rep2 CTCF GSM749723
57 EH000979_rep1.sga AG10803|CTCF||UW rep1 CTCF GSM749714
58 EH000979_rep2.sga AG10803|CTCF||UW rep2 CTCF GSM749759
59 EH000980_rep1.sga AoAF|CTCF||UW rep1 CTCF GSM749666
60 EH000980_rep2.sga AoAF|CTCF||UW rep2 CTCF GSM749736
61 EH000981_rep1.sga HBMEC|CTCF||UW rep1 CTCF GSM749743
62 EH000981_rep2.sga HBMEC|CTCF||UW rep2 CTCF GSM749710
63 EH000982_rep1.sga HCFaa|CTCF||UW rep1 CTCF GSM749732
64 EH000983_rep1.sga HCPEpiC|CTCF||UW rep1 CTCF GSM749735
65 EH000983_rep2.sga HCPEpiC|CTCF||UW rep2 CTCF GSM749745
66 EH000984_rep1.sga HEEpiC|CTCF||UW rep1 CTCF GSM749712
67 EH000984_rep2.sga HEEpiC|CTCF||UW rep2 CTCF GSM749726
68 EH000985_rep1.sga HMF|CTCF||UW rep1 CTCF GSM749665
69 EH000985_rep2.sga HMF|CTCF||UW rep2 CTCF GSM749675
70 EH000986_rep1.sga HPAF|CTCF||UW rep1 CTCF GSM749681
71 EH000986_rep2.sga HPAF|CTCF||UW rep2 CTCF GSM749751
72 EH000987_rep1.sga HPF|CTCF||UW rep1 CTCF GSM749699
73 EH000987_rep2.sga HPF|CTCF||UW rep2 CTCF GSM749717
74 EH000988_rep1.sga HRPEpiC|CTCF||UW rep1 CTCF GSM749673
75 EH000988_rep2.sga HRPEpiC|CTCF||UW rep2 CTCF -
76 EH000989_rep1.sga HA-sp|CTCF||UW rep1 CTCF GSM749696
77 EH000989_rep2.sga HA-sp|CTCF||UW rep2 CTCF -
78 EH001890_rep1.sga A549|CTCF||UW rep1 CTCF -
79 EH001890_rep2.sga A549|CTCF||UW rep2 CTCF -
80 EH001891_rep1.sga BE2_C|CTCF||UW rep1 CTCF -
81 EH001891_rep2.sga BE2_C|CTCF||UW rep2 CTCF -
82 EH001893_rep1.sga HAc|CTCF||UW rep1 CTCF -
83 EH001893_rep2.sga HAc|CTCF||UW rep2 CTCF -
84 EH001894_rep1.sga HCM|CTCF||UW rep1 CTCF -
85 EH001894_rep2.sga HCM|CTCF||UW rep2 CTCF -
86 EH001895_rep1.sga HFF-Myc|CTCF||UW rep1 CTCF -
87 EH001895_rep2.sga HFF-Myc|CTCF||UW rep2 CTCF -
88 EH001898_rep1.sga NB4|CTCF||UW rep1 CTCF -
89 EH001902_rep1.sga WI-38|CTCF||UW rep1 CTCF -
90 EH001902_rep2.sga WI-38|CTCF||UW rep2 CTCF -
91 EH002049_rep1.sga GM12866|CTCF||UW rep1 CTCF -
92 EH002049_rep2.sga GM12866|CTCF||UW rep2 CTCF -
93 EH002050_rep1.sga GM12867|CTCF||UW rep1 CTCF -
94 EH002050_rep2.sga GM12867|CTCF||UW rep2 CTCF -
95 EH002051_rep1.sga GM12868|CTCF||UW rep1 CTCF -
96 EH002051_rep2.sga GM12868|CTCF||UW rep2 CTCF -
97 EH002052_rep1.sga GM12869|CTCF||UW rep1 CTCF -
98 EH002052_rep2.sga GM12869|CTCF||UW rep2 CTCF -
99 EH002053_rep1.sga GM12870|CTCF||UW rep1 CTCF -
100 EH002053_rep2.sga GM12870|CTCF||UW rep2 CTCF -
101 EH002054_rep1.sga GM12871|CTCF||UW rep1 CTCF -
102 EH002054_rep2.sga GM12871|CTCF||UW rep2 CTCF -
103 EH002055_rep1.sga HCT-116|CTCF||UW rep1 CTCF -
104 EH002055_rep2.sga HCT-116|CTCF||UW rep2 CTCF -
105 EH002056_rep1.sga HVMF|CTCF||UW rep1 CTCF -
106 EH002056_rep2.sga HVMF|CTCF||UW rep2 CTCF -
107 EH002057_rep1.sga MCF-7|CTCF||UW rep1 CTCF -
108 EH002057_rep2.sga MCF-7|CTCF||UW rep2 CTCF -
109 EH002058_rep1.sga NHDF-neo|CTCF||UW rep1 CTCF -
110 EH002058_rep2.sga NHDF-neo|CTCF||UW rep2 CTCF -
111 EH002059_rep1.sga RPTEC|CTCF||UW rep1 CTCF -
112 EH002059_rep2.sga RPTEC|CTCF||UW rep2 CTCF -
113 EH002547_rep1.sga HFF|CTCF||UW rep1 CTCF -
114 EH002548_rep1.sga NHLF|CTCF||UW rep1 CTCF -
115 EH000453_rep1.sga BJ|Input||UW rep1 Input GSM749770
116 EH000454_rep1.sga Caco-2|Input||UW rep1 Input GSM749691
117 EH000455_rep1.sga GM06990|Input||UW rep1 Input GSM749731
118 EH000456_rep1.sga GM12801|Input||UW rep1 Input GSM749701
119 EH000457_rep1.sga GM12864|Input||UW rep1 Input GSM749754
120 EH000458_rep1.sga GM12865|Input||UW rep1 Input GSM749777
121 EH000459_rep1.sga GM12872|Input||UW rep1 Input GSM749765
122 EH000460_rep1.sga GM12873|Input||UW rep1 Input GSM749685
123 EH000461_rep1.sga GM12874|Input||UW rep1 Input GSM749742
124 EH000462_rep1.sga GM12875|Input||UW rep1 Input GSM749724
125 EH000463_rep1.sga GM12878|Input||UW rep1 Input GSM749669
126 EH000464_rep1.sga HEK293|Input||UW rep1 Input GSM749767
127 EH000465_rep1.sga HL-60|Input||UW rep1 Input GSM749775
128 EH000466_rep1.sga HMEC|Input||UW rep1 Input GSM749755
129 EH000467_rep1.sga HRE|Input||UW rep1 Input GSM749778
130 EH000468_rep1.sga HUVEC|Input||UW rep1 Input GSM749758
131 EH000469_rep1.sga HeLa-S3|Input||UW rep1 Input GSM749721
132 EH000470_rep1.sga HepG2|Input||UW rep1 Input GSM749756
133 EH000471_rep1.sga K562|Input||UW rep1 Input GSM749719
134 EH000472_rep1.sga NHEK|Input||UW rep1 Input GSM749744
135 EH000473_rep1.sga SAEC|Input||UW rep1 Input GSM749682
136 EH000474_rep1.sga SK-N-SH_RA|Input||UW rep1 Input GSM749700
137 EH000475_rep1.sga WERI-Rb-1|Input||UW rep1 Input GSM749766
138 EH000928_rep1.sga AG04449|Input||UW rep1 Input GSM749702
139 EH000930_rep1.sga AG04450|Input||UW rep1 Input GSM749697
140 EH000932_rep1.sga AG09309|Input||UW rep1 Input GSM749718
141 EH000934_rep1.sga AG09319|Input||UW rep1 Input GSM749671
142 EH000936_rep1.sga AG10803|Input||UW rep1 Input GSM749734
143 EH000938_rep1.sga AoAF|Input||UW rep1 Input GSM749772
144 EH000940_rep1.sga HBMEC|Input||UW rep1 Input GSM749746
145 EH000942_rep1.sga HCF|Input||UW rep1 Input GSM749713
146 EH000944_rep1.sga HCFaa|Input||UW rep1 Input GSM749761
147 EH000946_rep1.sga HCM|Input||UW rep1 Input GSM749738
148 EH000948_rep1.sga HCPEpiC|Input||UW rep1 Input GSM749776
149 EH000950_rep1.sga HCT-116|Input||UW rep1 Input GSM749774
150 EH000952_rep1.sga HEEpiC|Input||UW rep1 Input GSM749698
151 EH000956_rep1.sga HMF|Input||UW rep1 Input GSM749763
152 EH000958_rep1.sga HPAF|Input||UW rep1 Input GSM749709
153 EH000960_rep1.sga HPF|Input||UW rep1 Input GSM749773
154 EH000962_rep1.sga HRPEpiC|Input||UW rep1 Input GSM749771
155 EH000964_rep1.sga HVMF|Input||UW rep1 Input GSM749703
156 EH000966_rep1.sga Jurkat|Input||UW rep1 Input GSM749672
157 EH000968_rep1.sga MCF-7|Input||UW rep1 Input GSM749760
158 EH000970_rep1.sga NB4|Input||UW rep1 Input GSM749716
159 EH000972_rep1.sga NHDF-neo|Input||UW rep1 Input GSM749722
160 EH000974_rep1.sga HA-sp|Input||UW rep1 Input GSM749720
161 EH001892_rep1.sga BE2_C|Input||UW rep1 Input -
162 EH001896_rep1.sga HFF-Myc|Input||UW rep1 Input -
163 EH001897_rep1.sga LNCaP|Input||UW rep1 Input -
164 EH001899_rep1.sga NHLF|Input||UW rep1 Input -
165 EH001900_rep1.sga PANC-1|Input||UW rep1 Input -
166 EH001901_rep1.sga SK-N-MC|Input||UW rep1 Input -
167 EH001903_rep1.sga WI-38|Input||UW rep1 Input -
168 EH001904_rep1.sga A549|Input||UW rep1 Input -
169 EH002043_rep1.sga HFF|Input||UW rep1 Input -
170 EH002045_rep1.sga RPTEC|Input||UW rep1 Input -
171 EH002048_rep1.sga WI-38|Input|4OHTAM_20nM_72hr|UW rep1 Input -
172 EH002165_rep1.sga HAc|Input||UW rep1 Input -
173 EH002169_rep1.sga Monocytes-CD14+_RO01746|Input||UW rep1 Input -
174 EH002170_rep1.sga CD20+_RO01778|Input||UW rep1 Input -
175 EH002172_rep1.sga CD20+_RO01794|Input||UW rep1 Input -
176 EH002173_rep1.sga SKMC|Input||UW rep1 Input -
177 EH002532_rep1.sga H7-hESC|Input|diffProtA_14d|UW rep1 Input -
178 EH002543_rep1.sga H7-hESC|Input|diffProtA_2d|UW rep1 Input -
179 EH002544_rep1.sga H7-hESC|Input|diffProtA_5d|UW rep1 Input -
180 EH002545_rep1.sga H7-hESC|Input|diffProtA_9d|UW rep1 Input -

ChIP-seq peaks files:

Filename Description Feature GEO-ID
1 EH000392_narrowPeak_rep1.sga GM06990|CTCF narrowPeak||UW rep1 CTCF_P GSM749708
2 EH000392_narrowPeak_rep2.sga GM06990|CTCF narrowPeak||UW rep2 CTCF_P GSM749705
3 EH000393_narrowPeak_rep1.sga GM12801|CTCF narrowPeak||UW rep1 CTCF_P GSM749711
4 EH000394_narrowPeak_rep1.sga GM12878|CTCF narrowPeak||UW rep1 CTCF_P GSM749704
5 EH000394_narrowPeak_rep2.sga GM12878|CTCF narrowPeak||UW rep2 CTCF_P GSM749706
6 EH000396_narrowPeak_rep1.sga HEK293|CTCF narrowPeak||UW rep1 CTCF_P GSM749668
7 EH000396_narrowPeak_rep2.sga HEK293|CTCF narrowPeak||UW rep2 CTCF_P GSM749687
8 EH000397_narrowPeak_rep1.sga HL-60|CTCF narrowPeak||UW rep1 CTCF_P GSM749688
9 EH000398_narrowPeak_rep1.sga HeLa-S3|CTCF narrowPeak||UW rep1 CTCF_P GSM749729
10 EH000398_narrowPeak_rep2.sga HeLa-S3|CTCF narrowPeak||UW rep2 CTCF_P GSM749739
11 EH000399_narrowPeak_rep1.sga K562|CTCF narrowPeak||UW rep1 CTCF_P GSM749690
12 EH000399_narrowPeak_rep2.sga K562|CTCF narrowPeak||UW rep2 CTCF_P GSM749733
13 EH000401_narrowPeak_rep1.sga HepG2|CTCF narrowPeak||UW rep1 CTCF_P GSM749715
14 EH000401_narrowPeak_rep2.sga HepG2|CTCF narrowPeak||UW rep2 CTCF_P GSM749683
15 EH000402_narrowPeak_rep1.sga WERI-Rb-1|CTCF narrowPeak||UW rep1 CTCF_P GSM749768
16 EH000402_narrowPeak_rep2.sga WERI-Rb-1|CTCF narrowPeak||UW rep2 CTCF_P GSM749679
17 EH000403_narrowPeak_rep1.sga BJ|CTCF narrowPeak||UW rep1 CTCF_P GSM749677
18 EH000403_narrowPeak_rep2.sga BJ|CTCF narrowPeak||UW rep2 CTCF_P GSM749752
19 EH000404_narrowPeak_rep1.sga Caco-2|CTCF narrowPeak||UW rep1 CTCF_P GSM749748
20 EH000404_narrowPeak_rep2.sga Caco-2|CTCF narrowPeak||UW rep2 CTCF_P GSM749689
21 EH000405_narrowPeak_rep1.sga HRE|CTCF narrowPeak||UW rep1 CTCF_P GSM749727
22 EH000405_narrowPeak_rep2.sga HRE|CTCF narrowPeak||UW rep2 CTCF_P GSM749737
23 EH000406_narrowPeak_rep1.sga NHEK|CTCF narrowPeak||UW rep1 CTCF_P GSM749707
24 EH000406_narrowPeak_rep2.sga NHEK|CTCF narrowPeak||UW rep2 CTCF_P GSM749747
25 EH000410_narrowPeak_rep1.sga HUVEC|CTCF narrowPeak||UW rep1 CTCF_P GSM749674
26 EH000410_narrowPeak_rep2.sga HUVEC|CTCF narrowPeak||UW rep2 CTCF_P GSM749749
27 EH000419_narrowPeak_rep1.sga HMEC|CTCF narrowPeak||UW rep1 CTCF_P GSM749753
28 EH000419_narrowPeak_rep2.sga HMEC|CTCF narrowPeak||UW rep2 CTCF_P GSM1022631
29 EH000437_narrowPeak_rep1.sga SAEC|CTCF narrowPeak||UW rep1 CTCF_P GSM749684
30 EH000437_narrowPeak_rep2.sga SAEC|CTCF narrowPeak||UW rep2 CTCF_P GSM749779
31 EH000439_narrowPeak_rep1.sga SK-N-SH_RA|CTCF narrowPeak||UW rep1 CTCF_P GSM749693
32 EH000439_narrowPeak_rep2.sga SK-N-SH_RA|CTCF narrowPeak||UW rep2 CTCF_P GSM749667
33 EH000447_narrowPeak_rep1.sga GM12864|CTCF narrowPeak||UW rep1 CTCF_P GSM749676
34 EH000447_narrowPeak_rep2.sga GM12864|CTCF narrowPeak||UW rep2 CTCF_P GSM749762
35 EH000447_narrowPeak_rep3.sga GM12864|CTCF narrowPeak||UW rep3 CTCF_P GSM1022664
36 EH000448_narrowPeak_rep1.sga GM12865|CTCF narrowPeak||UW rep1 CTCF_P GSM749740
37 EH000448_narrowPeak_rep2.sga GM12865|CTCF narrowPeak||UW rep2 CTCF_P GSM749725
38 EH000448_narrowPeak_rep3.sga GM12865|CTCF narrowPeak||UW rep3 CTCF_P GSM1022636
39 EH000449_narrowPeak_rep1.sga GM12872|CTCF narrowPeak||UW rep1 CTCF_P GSM749694
40 EH000449_narrowPeak_rep2.sga GM12872|CTCF narrowPeak||UW rep2 CTCF_P GSM749692
41 EH000449_narrowPeak_rep3.sga GM12872|CTCF narrowPeak||UW rep3 CTCF_P GSM1022633
42 EH000450_narrowPeak_rep1.sga GM12873|CTCF narrowPeak||UW rep1 CTCF_P GSM749730
43 EH000450_narrowPeak_rep2.sga GM12873|CTCF narrowPeak||UW rep2 CTCF_P GSM749686
44 EH000450_narrowPeak_rep3.sga GM12873|CTCF narrowPeak||UW rep3 CTCF_P GSM1022629
45 EH000451_narrowPeak_rep1.sga GM12874|CTCF narrowPeak||UW rep1 CTCF_P GSM749757
46 EH000451_narrowPeak_rep2.sga GM12874|CTCF narrowPeak||UW rep2 CTCF_P GSM749741
47 EH000452_narrowPeak_rep1.sga GM12875|CTCF narrowPeak||UW rep1 CTCF_P GSM749764
48 EH000452_narrowPeak_rep2.sga GM12875|CTCF narrowPeak||UW rep2 CTCF_P GSM749670
49 EH000975_narrowPeak_rep1.sga AG04449|CTCF narrowPeak||UW rep1 CTCF_P GSM749695
50 EH000975_narrowPeak_rep2.sga AG04449|CTCF narrowPeak||UW rep2 CTCF_P GSM749678
51 EH000976_narrowPeak_rep1.sga AG04450|CTCF narrowPeak||UW rep1 CTCF_P GSM749769
52 EH000976_narrowPeak_rep2.sga AG04450|CTCF narrowPeak||UW rep2 CTCF_P GSM1022635
53 EH000977_narrowPeak_rep1.sga AG09309|CTCF narrowPeak||UW rep1 CTCF_P GSM749750
54 EH000977_narrowPeak_rep2.sga AG09309|CTCF narrowPeak||UW rep2 CTCF_P GSM749680
55 EH000978_narrowPeak_rep1.sga AG09319|CTCF narrowPeak||UW rep1 CTCF_P GSM749728
56 EH000978_narrowPeak_rep2.sga AG09319|CTCF narrowPeak||UW rep2 CTCF_P GSM749723
57 EH000979_narrowPeak_rep1.sga AG10803|CTCF narrowPeak||UW rep1 CTCF_P GSM749714
58 EH000979_narrowPeak_rep2.sga AG10803|CTCF narrowPeak||UW rep2 CTCF_P GSM749759
59 EH000980_narrowPeak_rep1.sga AoAF|CTCF narrowPeak||UW rep1 CTCF_P GSM749666
60 EH000980_narrowPeak_rep2.sga AoAF|CTCF narrowPeak||UW rep2 CTCF_P GSM749736
61 EH000981_narrowPeak_rep1.sga HBMEC|CTCF narrowPeak||UW rep1 CTCF_P GSM749743
62 EH000981_narrowPeak_rep2.sga HBMEC|CTCF narrowPeak||UW rep2 CTCF_P GSM749710
63 EH000982_narrowPeak_rep1.sga HCFaa|CTCF narrowPeak||UW rep1 CTCF_P GSM749732
64 EH000983_narrowPeak_rep1.sga HCPEpiC|CTCF narrowPeak||UW rep1 CTCF_P GSM749735
65 EH000983_narrowPeak_rep2.sga HCPEpiC|CTCF narrowPeak||UW rep2 CTCF_P GSM749745
66 EH000984_narrowPeak_rep1.sga HEEpiC|CTCF narrowPeak||UW rep1 CTCF_P GSM749712
67 EH000984_narrowPeak_rep2.sga HEEpiC|CTCF narrowPeak||UW rep2 CTCF_P GSM749726
68 EH000985_narrowPeak_rep1.sga HMF|CTCF narrowPeak||UW rep1 CTCF_P GSM749665
69 EH000985_narrowPeak_rep2.sga HMF|CTCF narrowPeak||UW rep2 CTCF_P GSM749675
70 EH000986_narrowPeak_rep1.sga HPAF|CTCF narrowPeak||UW rep1 CTCF_P GSM749681
71 EH000986_narrowPeak_rep2.sga HPAF|CTCF narrowPeak||UW rep2 CTCF_P GSM749751
72 EH000987_narrowPeak_rep1.sga HPF|CTCF narrowPeak||UW rep1 CTCF_P GSM749699
73 EH000987_narrowPeak_rep2.sga HPF|CTCF narrowPeak||UW rep2 CTCF_P GSM749717
74 EH000988_narrowPeak_rep1.sga HRPEpiC|CTCF narrowPeak||UW rep1 CTCF_P GSM749673
75 EH000988_narrowPeak_rep2.sga HRPEpiC|CTCF narrowPeak||UW rep2 CTCF_P GSM1022665
76 EH000989_narrowPeak_rep1.sga HA-sp|CTCF narrowPeak||UW rep1 CTCF_P GSM749696
77 EH000989_narrowPeak_rep2.sga HA-sp|CTCF narrowPeak||UW rep2 CTCF_P GSM1022668
78 EH001890_narrowPeak_rep1.sga A549|CTCF narrowPeak||UW rep1 CTCF_P GSM1022640
79 EH001890_narrowPeak_rep2.sga A549|CTCF narrowPeak||UW rep2 CTCF_P GSM1022639
80 EH001891_narrowPeak_rep1.sga BE2_C|CTCF narrowPeak||UW rep1 CTCF_P GSM1022653
81 EH001891_narrowPeak_rep2.sga BE2_C|CTCF narrowPeak||UW rep2 CTCF_P GSM1022650
82 EH001893_narrowPeak_rep1.sga HAc|CTCF narrowPeak||UW rep1 CTCF_P GSM1022661
83 EH001893_narrowPeak_rep2.sga HAc|CTCF narrowPeak||UW rep2 CTCF_P GSM1022662
84 EH001894_narrowPeak_rep1.sga HCM|CTCF narrowPeak||UW rep1 CTCF_P GSM1022657
85 EH001894_narrowPeak_rep2.sga HCM|CTCF narrowPeak||UW rep2 CTCF_P GSM1022677
86 EH001895_narrowPeak_rep1.sga HFF-Myc|CTCF narrowPeak||UW rep1 CTCF_P GSM1022671
87 EH001895_narrowPeak_rep2.sga HFF-Myc|CTCF narrowPeak||UW rep2 CTCF_P GSM1022669
88 EH001898_narrowPeak_rep1.sga NB4|CTCF narrowPeak||UW rep1 CTCF_P GSM1022643
89 EH001902_narrowPeak_rep1.sga WI-38|CTCF narrowPeak||UW rep1 CTCF_P GSM1022637
90 EH001902_narrowPeak_rep2.sga WI-38|CTCF narrowPeak||UW rep2 CTCF_P GSM1022634
91 EH002049_narrowPeak_rep1.sga GM12866|CTCF narrowPeak||UW rep1 CTCF_P GSM849305
92 EH002049_narrowPeak_rep2.sga GM12866|CTCF narrowPeak||UW rep2 CTCF_P GSM849305
93 EH002050_narrowPeak_rep1.sga GM12867|CTCF narrowPeak||UW rep1 CTCF_P GSM849301
94 EH002050_narrowPeak_rep2.sga GM12867|CTCF narrowPeak||UW rep2 CTCF_P GSM849301
95 EH002051_narrowPeak_rep1.sga GM12868|CTCF narrowPeak||UW rep1 CTCF_P GSM849300
96 EH002051_narrowPeak_rep2.sga GM12868|CTCF narrowPeak||UW rep2 CTCF_P GSM849300
97 EH002052_narrowPeak_rep1.sga GM12869|CTCF narrowPeak||UW rep1 CTCF_P GSM849303
98 EH002052_narrowPeak_rep2.sga GM12869|CTCF narrowPeak||UW rep2 CTCF_P GSM849303
99 EH002053_narrowPeak_rep1.sga GM12870|CTCF narrowPeak||UW rep1 CTCF_P GSM849302
100 EH002053_narrowPeak_rep2.sga GM12870|CTCF narrowPeak||UW rep2 CTCF_P GSM849302
101 EH002054_narrowPeak_rep1.sga GM12871|CTCF narrowPeak||UW rep1 CTCF_P GSM849304
102 EH002054_narrowPeak_rep2.sga GM12871|CTCF narrowPeak||UW rep2 CTCF_P GSM849304
103 EH002055_narrowPeak_rep1.sga HCT-116|CTCF narrowPeak||UW rep1 CTCF_P GSM1022652
104 EH002055_narrowPeak_rep2.sga HCT-116|CTCF narrowPeak||UW rep2 CTCF_P GSM1022651
105 EH002056_narrowPeak_rep1.sga HVMF|CTCF narrowPeak||UW rep1 CTCF_P GSM1022630
106 EH002056_narrowPeak_rep2.sga HVMF|CTCF narrowPeak||UW rep2 CTCF_P GSM1022628
107 EH002057_narrowPeak_rep1.sga MCF-7|CTCF narrowPeak||UW rep1 CTCF_P GSM1022658
108 EH002057_narrowPeak_rep2.sga MCF-7|CTCF narrowPeak||UW rep2 CTCF_P GSM1022663
109 EH002058_narrowPeak_rep1.sga NHDF-neo|CTCF narrowPeak||UW rep1 CTCF_P GSM1022675
110 EH002058_narrowPeak_rep2.sga NHDF-neo|CTCF narrowPeak||UW rep2 CTCF_P GSM1022676
111 EH002059_narrowPeak_rep1.sga RPTEC|CTCF narrowPeak||UW rep1 CTCF_P GSM1022667
112 EH002059_narrowPeak_rep2.sga RPTEC|CTCF narrowPeak||UW rep2 CTCF_P GSM1022666
113 EH002547_narrowPeak_rep1.sga HFF|CTCF narrowPeak||UW rep1 CTCF_P GSM1022644
114 EH002548_narrowPeak_rep1.sga NHLF|CTCF narrowPeak||UW rep1 CTCF_P GSM1022626

Notes on samples nomenclature:

All sample information was derived from a file named "files.txt" downloaded from the above-indicated URL. This file contains a list of filenames long with annotation (metadata). The sample descriptions provided here include cell type, ChIP-seq target (transcription factor), treatment and replicate. Cell types and treatments were transferred from ENCODE annotation as such without any editing.

The sample descriptions provided here were required to be unique across all ENCODE data series of the MGA repository. For this reason, the name of the data contributing lab is always indicated in the replicate field. Note further that the names of the local data files contain as first part the experiment identifier (dccAccession) extracted from the ENCODE annotation file. This identifier makes it possible to match a data file from this series to the corresponding peak list in hg19/encode/Uniform_TFBS.

More information about cell lines, antibodies, treatments, protocols, etc. can be found at https://genome.ucsc.edu/encode/otherTerms.html.

Optional fields in SGA files:

The peak files contain in the optional sixth field a positive real number reflecting the overall enrichment of the ChIP-seq signal in the peak region.

Technical Notes

Files with a non-empty objectStatus in the file list provided by UCSC were not considered. BAM files were converted into BED using bamToBed (bedtools v2.27.0) and subsequently converted into SGA using bed2sga ( ChIP-Seq v. 1.5.3). Peak files in narrowPeak format were converted into SGA using bed2sga with options --narrowPeak -e 7.