Thurman 2012, Histone modifications by ChIP-seq from ENCODE/University of Washington.

This samples serie was produced as part of the ENCODE Project. This serie contains histone modification ChIP-seq data for several cell lines. Some of the samples have been treated or are genetically modified.

• Raw data was downloaded from: UCSC
• Input file format: BAM
• Download date: 26-9-2016

From H. sapiens (Feb 2009 GRCh37/hg19).

ChIP-seq data:

	Filename	Description	Feature	GEO-ID
1	wgEncodeUwHistoneAg04450H3k27acStdAlnRep1.sga	AG04450 - H3K27ac - None - rep1	H3K27ac	GSM1010912
2	wgEncodeUwHistoneAg04450H3k27me3StdAlnRep1.sga	AG04450 - H3K27me3 - None - rep1	H3K27me3	GSM1010913
3	wgEncodeUwHistoneBjH3k27me3StdAlnRep1.sga	BJ - H3K27me3 - None - rep1	H3K27me3	GSM945204
4	wgEncodeUwHistoneBjH3k27me3StdAlnRep2.sga	BJ - H3K27me3 - None - rep2	H3K27me3	GSM945204
5	wgEncodeUwHistoneCaco2H3k27me3StdAlnRep1.sga	Caco-2 - H3K27me3 - None - rep1	H3K27me3	GSM945203
6	wgEncodeUwHistoneCaco2H3k27me3StdAlnRep2.sga	Caco-2 - H3K27me3 - None - rep2	H3K27me3	GSM945203
7	wgEncodeUwHistoneGm06990H3k27me3StdAlnRep1.sga	GM06990 - H3K27me3 - None - rep1	H3K27me3	GSM945205
8	wgEncodeUwHistoneGm06990H3k27me3StdAlnRep2.sga	GM06990 - H3K27me3 - None - rep2	H3K27me3	GSM945205
9	wgEncodeUwHistoneGm12878H3k27me3StdAlnRep1.sga	GM12878 - H3K27me3 - None - rep1	H3K27me3	GSM945196
10	wgEncodeUwHistoneGm12878H3k27me3StdAlnRep2.sga	GM12878 - H3K27me3 - None - rep2	H3K27me3	GSM945196
11	wgEncodeUwHistoneH7esH3k27me3StdAlnRep1.sga	H7-hESC - H3K27me3 - None - rep1	H3K27me3	GSM945183
12	wgEncodeUwHistoneH7esH3k27me3StdAlnRep2.sga	H7-hESC - H3K27me3 - None - rep2	H3K27me3	GSM945183
13	wgEncodeUwHistoneH7esH3k27me3StdDiffa14dAlnRep1.sga	H7-hESC - H3K27me3 - diffProtA_14d - rep1	H3K27me3	GSM945320
14	wgEncodeUwHistoneH7esH3k27me3StdDiffa14dAlnRep2.sga	H7-hESC - H3K27me3 - diffProtA_14d - rep2	H3K27me3	GSM945320
15	wgEncodeUwHistoneH7esH3k27me3StdDiffa2dAlnRep1.sga	H7-hESC - H3K27me3 - diffProtA_2d - rep1	H3K27me3	GSM945325
16	wgEncodeUwHistoneH7esH3k27me3StdDiffa2dAlnRep2.sga	H7-hESC - H3K27me3 - diffProtA_2d - rep2	H3K27me3	GSM945325
17	wgEncodeUwHistoneH7esH3k27me3StdDiffa5dAlnRep1.sga	H7-hESC - H3K27me3 - diffProtA_5d - rep1	H3K27me3	GSM945326
18	wgEncodeUwHistoneH7esH3k27me3StdDiffa5dAlnRep2.sga	H7-hESC - H3K27me3 - diffProtA_5d - rep2	H3K27me3	GSM945326
19	wgEncodeUwHistoneH7esH3k27me3StdDiffa9dAlnRep1.sga	H7-hESC - H3K27me3 - diffProtA_9d - rep1	H3K27me3	GSM945323
20	wgEncodeUwHistoneH7esH3k27me3StdDiffa9dAlnRep2.sga	H7-hESC - H3K27me3 - diffProtA_9d - rep2	H3K27me3	GSM945323
21	wgEncodeUwHistoneHmecH3k27me3StdAlnRep1.sga	HMEC - H3K27me3 - None - rep1	H3K27me3	GSM945277
22	wgEncodeUwHistoneHreH3k27me3StdAlnRep1.sga	HRE - H3K27me3 - None - rep1	H3K27me3	GSM945160
23	wgEncodeUwHistoneHreH3k27me3StdAlnRep2.sga	HRE - H3K27me3 - None - rep2	H3K27me3	GSM945160
24	wgEncodeUwHistoneHuvecH3k27me3StdAlnRep1.sga	HUVEC - H3K27me3 - None - rep1	H3K27me3	GSM945180
25	wgEncodeUwHistoneHuvecH3k27me3StdAlnRep2.sga	HUVEC - H3K27me3 - None - rep2	H3K27me3	GSM945180
26	wgEncodeUwHistoneHelas3H3k27me3StdAlnRep1.sga	HeLa-S3 - H3K27me3 - None - rep1	H3K27me3	GSM945208
27	wgEncodeUwHistoneHelas3H3k27me3StdAlnRep2.sga	HeLa-S3 - H3K27me3 - None - rep2	H3K27me3	GSM945208
28	wgEncodeUwHistoneHepg2H3k27me3StdAlnRep1.sga	HepG2 - H3K27me3 - None - rep1	H3K27me3	GSM945231
29	wgEncodeUwHistoneHepg2H3k27me3StdAlnRep2.sga	HepG2 - H3K27me3 - None - rep2	H3K27me3	GSM945231
30	wgEncodeUwHistoneK562H3k27me3StdAlnRep1.sga	K562 - H3K27me3 - None - rep1	H3K27me3	GSM945228
31	wgEncodeUwHistoneK562H3k27me3StdAlnRep2.sga	K562 - H3K27me3 - None - rep2	H3K27me3	GSM945228
32	wgEncodeUwHistoneMonocd14ro1746H3k27me3StdAlnRep1.sga	Monocytes-CD14+_RO01746 - H3K27me3 - None - rep1	H3K27me3	GSM945301
33	wgEncodeUwHistoneNhekH3k27me3StdAlnRep1.sga	NHEK - H3K27me3 - None - rep1	H3K27me3	GSM945300
34	wgEncodeUwHistoneNhekH3k27me3StdAlnRep2.sga	NHEK - H3K27me3 - None - rep2	H3K27me3	GSM945300
35	wgEncodeUwHistoneSaecH3k27me3StdAlnRep1.sga	SAEC - H3K27me3 - None - rep1	H3K27me3	GSM945200
36	wgEncodeUwHistoneSaecH3k27me3StdAlnRep2.sga	SAEC - H3K27me3 - None - rep2	H3K27me3	GSM945200
37	wgEncodeUwHistoneSknshraH3k27me3StdAlnRep1.sga	SK-N-SH_RA - H3K27me3 - None - rep1	H3K27me3	GSM945210
38	wgEncodeUwHistoneSknshraH3k27me3StdAlnRep2.sga	SK-N-SH_RA - H3K27me3 - None - rep2	H3K27me3	GSM945210
39	wgEncodeUwHistoneBjH3k36me3StdAlnRep1.sga	BJ - H3K36me3 - None - rep1	H3K36me3	GSM945207
40	wgEncodeUwHistoneBjH3k36me3StdAlnRep2.sga	BJ - H3K36me3 - None - rep2	H3K36me3	GSM945207
41	wgEncodeUwHistoneCaco2H3k36me3StdAlnRep1.sga	Caco-2 - H3K36me3 - None - rep1	H3K36me3	GSM945206
42	wgEncodeUwHistoneCaco2H3k36me3StdAlnRep2.sga	Caco-2 - H3K36me3 - None - rep2	H3K36me3	GSM945206
43	wgEncodeUwHistoneGm06990H3k36me3StdAlnRep1.sga	GM06990 - H3K36me3 - None - rep1	H3K36me3	GSM945213
44	wgEncodeUwHistoneGm06990H3k36me3StdAlnRep2.sga	GM06990 - H3K36me3 - None - rep2	H3K36me3	GSM945213
45	wgEncodeUwHistoneGm12878H3k36me3StdAlnRep1.sga	GM12878 - H3K36me3 - None - rep1	H3K36me3	GSM945212
46	wgEncodeUwHistoneGm12878H3k36me3StdAlnRep2.sga	GM12878 - H3K36me3 - None - rep2	H3K36me3	GSM945212
47	wgEncodeUwHistoneH7esH3k36me3StdAlnRep1.sga	H7-hESC - H3K36me3 - None - rep1	H3K36me3	GSM945184
48	wgEncodeUwHistoneH7esH3k36me3StdAlnRep2.sga	H7-hESC - H3K36me3 - None - rep2	H3K36me3	GSM945184
49	wgEncodeUwHistoneH7esH3k36me3StdDiffa14dAlnRep1.sga	H7-hESC - H3K36me3 - diffProtA_14d - rep1	H3K36me3	GSM945324
50	wgEncodeUwHistoneH7esH3k36me3StdDiffa14dAlnRep2.sga	H7-hESC - H3K36me3 - diffProtA_14d - rep2	H3K36me3	GSM945324
51	wgEncodeUwHistoneH7esH3k36me3StdDiffa2dAlnRep1.sga	H7-hESC - H3K36me3 - diffProtA_2d - rep1	H3K36me3	GSM945315
52	wgEncodeUwHistoneH7esH3k36me3StdDiffa2dAlnRep2.sga	H7-hESC - H3K36me3 - diffProtA_2d - rep2	H3K36me3	GSM945315
53	wgEncodeUwHistoneH7esH3k36me3StdDiffa5dAlnRep1.sga	H7-hESC - H3K36me3 - diffProtA_5d - rep1	H3K36me3	GSM945316
54	wgEncodeUwHistoneH7esH3k36me3StdDiffa5dAlnRep2.sga	H7-hESC - H3K36me3 - diffProtA_5d - rep2	H3K36me3	GSM945316
55	wgEncodeUwHistoneH7esH3k36me3StdDiffa9dAlnRep1.sga	H7-hESC - H3K36me3 - diffProtA_9d - rep1	H3K36me3	GSM945192
56	wgEncodeUwHistoneH7esH3k36me3StdDiffa9dAlnRep2.sga	H7-hESC - H3K36me3 - diffProtA_9d - rep2	H3K36me3	GSM945192
57	wgEncodeUwHistoneHreH3k36me3StdAlnRep1.sga	HRE - H3K36me3 - None - rep1	H3K36me3	GSM945232
58	wgEncodeUwHistoneHreH3k36me3StdAlnRep2.sga	HRE - H3K36me3 - None - rep2	H3K36me3	GSM945232
59	wgEncodeUwHistoneHuvecH3k36me3StdAlnRep1.sga	HUVEC - H3K36me3 - None - rep1	H3K36me3	GSM945233
60	wgEncodeUwHistoneHuvecH3k36me3StdAlnRep2.sga	HUVEC - H3K36me3 - None - rep2	H3K36me3	GSM945233
61	wgEncodeUwHistoneHelas3H3k36me3StdAlnRep1.sga	HeLa-S3 - H3K36me3 - None - rep1	H3K36me3	GSM945230
62	wgEncodeUwHistoneHelas3H3k36me3StdAlnRep2.sga	HeLa-S3 - H3K36me3 - None - rep2	H3K36me3	GSM945230
63	wgEncodeUwHistoneHepg2H3k36me3StdAlnRep1.sga	HepG2 - H3K36me3 - None - rep1	H3K36me3	GSM945211
64	wgEncodeUwHistoneHepg2H3k36me3StdAlnRep2.sga	HepG2 - H3K36me3 - None - rep2	H3K36me3	GSM945211
65	wgEncodeUwHistoneK562H3k36me3StdAlnRep1.sga	K562 - H3K36me3 - None - rep1	H3K36me3	GSM945302
66	wgEncodeUwHistoneK562H3k36me3StdAlnRep2.sga	K562 - H3K36me3 - None - rep2	H3K36me3	GSM945302
67	wgEncodeUwHistoneNhekH3k36me3StdAlnRep1.sga	NHEK - H3K36me3 - None - rep1	H3K36me3	GSM945174
68	wgEncodeUwHistoneNhekH3k36me3StdAlnRep2.sga	NHEK - H3K36me3 - None - rep2	H3K36me3	GSM945174
69	wgEncodeUwHistoneSaecH3k36me3StdAlnRep1.sga	SAEC - H3K36me3 - None - rep1	H3K36me3	GSM945226
70	wgEncodeUwHistoneSaecH3k36me3StdAlnRep2.sga	SAEC - H3K36me3 - None - rep2	H3K36me3	GSM945226
71	wgEncodeUwHistoneSknshraH3k36me3StdAlnRep1.sga	SK-N-SH_RA - H3K36me3 - None - rep1	H3K36me3	GSM945209
72	wgEncodeUwHistoneSknshraH3k36me3StdAlnRep2.sga	SK-N-SH_RA - H3K36me3 - None - rep2	H3K36me3	GSM945209
73	wgEncodeUwHistoneA549H3k04me3StdAlnRep1.sga	A549 - H3K4me3 - None - rep1	H3K4me3	GSM945244
74	wgEncodeUwHistoneA549H3k04me3StdAlnRep2.sga	A549 - H3K4me3 - None - rep2	H3K4me3	GSM945244
75	wgEncodeUwHistoneAg04449H3k4me3StdAlnRep1.sga	AG04449 - H3K4me3 - None - rep1	H3K4me3	GSM945187
76	wgEncodeUwHistoneAg04449H3k4me3StdAlnRep2.sga	AG04449 - H3K4me3 - None - rep2	H3K4me3	GSM945187
77	wgEncodeUwHistoneAg04450H3k4me3StdAlnRep1.sga	AG04450 - H3K4me3 - None - rep1	H3K4me3	GSM945177
78	wgEncodeUwHistoneAg04450H3k4me3StdAlnRep2.sga	AG04450 - H3K4me3 - None - rep2	H3K4me3	GSM945177
79	wgEncodeUwHistoneAg09309H3k4me3StdAlnRep1.sga	AG09309 - H3K4me3 - None - rep1	H3K4me3	GSM945168
80	wgEncodeUwHistoneAg09309H3k4me3StdAlnRep2.sga	AG09309 - H3K4me3 - None - rep2	H3K4me3	GSM945168
81	wgEncodeUwHistoneAg09319H3k4me3StdAlnRep1.sga	AG09319 - H3K4me3 - None - rep1	H3K4me3	GSM945166
82	wgEncodeUwHistoneAg09319H3k4me3StdAlnRep2.sga	AG09319 - H3K4me3 - None - rep2	H3K4me3	GSM945166
83	wgEncodeUwHistoneAg10803H3k4me3StdAlnRep1.sga	AG10803 - H3K4me3 - None - rep1	H3K4me3	GSM945172
84	wgEncodeUwHistoneAg10803H3k4me3StdAlnRep2.sga	AG10803 - H3K4me3 - None - rep2	H3K4me3	GSM945172
85	wgEncodeUwHistoneAoafH3k4me3StdAlnRep1.sga	AoAF - H3K4me3 - None - rep1	H3K4me3	GSM945170
86	wgEncodeUwHistoneAoafH3k4me3StdAlnRep2.sga	AoAF - H3K4me3 - None - rep2	H3K4me3	GSM945170
87	wgEncodeUwHistoneBe2cH3k04me3StdAlnRep1.sga	BE2_C - H3K4me3 - None - rep1	H3K4me3	GSM945241
88	wgEncodeUwHistoneBe2cH3k04me3StdAlnRep2.sga	BE2_C - H3K4me3 - None - rep2	H3K4me3	GSM945241
89	wgEncodeUwHistoneBjH3k4me3StdAlnRep1.sga	BJ - H3K4me3 - None - rep1	H3K4me3	GSM945178
90	wgEncodeUwHistoneBjH3k4me3StdAlnRep2.sga	BJ - H3K4me3 - None - rep2	H3K4me3	GSM945178
91	wgEncodeUwHistoneCd20ro01778H3k04me3StdAlnRep1.sga	CD20+_RO01778 - H3K4me3 - None - rep1	H3K4me3	GSM945229
92	wgEncodeUwHistoneCd20ro01778H3k04me3StdAlnRep2.sga	CD20+_RO01778 - H3K4me3 - None - rep2	H3K4me3	GSM945229
93	wgEncodeUwHistoneCd20ro01794H3k04me3StdAlnRep3.sga	CD20+_RO01794 - H3K4me3 - None - rep3	H3K4me3	GSM945198
94	wgEncodeUwHistoneCaco2H3k4me3StdAlnRep1.sga	Caco-2 - H3K4me3 - None - rep1	H3K4me3	GSM945162
95	wgEncodeUwHistoneCaco2H3k4me3StdAlnRep2.sga	Caco-2 - H3K4me3 - None - rep2	H3K4me3	GSM945162
96	wgEncodeUwHistoneGm06990H3k4me3StdAlnRep1.sga	GM06990 - H3K4me3 - None - rep1	H3K4me3	GSM945179
97	wgEncodeUwHistoneGm06990H3k4me3StdAlnRep2.sga	GM06990 - H3K4me3 - None - rep2	H3K4me3	GSM945179
98	wgEncodeUwHistoneGm12864H3k04me3StdAlnRep1.sga	GM12864 - H3K4me3 - None - rep1	H3K4me3	GSM945296
99	wgEncodeUwHistoneGm12864H3k04me3StdAlnRep2.sga	GM12864 - H3K4me3 - None - rep2	H3K4me3	GSM945296
100	wgEncodeUwHistoneGm12865H3k04me3StdAlnRep1.sga	GM12865 - H3K4me3 - None - rep1	H3K4me3	GSM945295
101	wgEncodeUwHistoneGm12865H3k04me3StdAlnRep2.sga	GM12865 - H3K4me3 - None - rep2	H3K4me3	GSM945295
102	wgEncodeUwHistoneGm12866H3k04me3StdAlnRep1.sga	GM12866 - H3K4me3 - None - rep1	H3K4me3	GSM945220
103	wgEncodeUwHistoneGm12875H3k04me3StdAlnRep1.sga	GM12875 - H3K4me3 - None - rep1	H3K4me3	GSM945221
104	wgEncodeUwHistoneGm12878H3k4me3StdAlnRep1.sga	GM12878 - H3K4me3 - None - rep1	H3K4me3	GSM945188
105	wgEncodeUwHistoneGm12878H3k4me3StdAlnRep2.sga	GM12878 - H3K4me3 - None - rep2	H3K4me3	GSM945188
106	wgEncodeUwHistoneH7esH3k04me3StdAlnRep1.sga	H7-hESC - H3K4me3 - diffProtA_5d - rep1	H3K4me3
107	wgEncodeUwHistoneH7esH3k04me3StdAlnRep2.sga	H7-hESC - H3K4me3 - diffProtA_14d - rep2	H3K4me3
108	wgEncodeUwHistoneH7esH3k04me3StdDiffa14dAlnRep1.sga	H7-hESC - H3K4me3 - diffProtA_14d - rep1	H3K4me3	GSM945321
109	wgEncodeUwHistoneH7esH3k04me3StdDiffa14dAlnRep2.sga	H7-hESC - H3K4me3 - diffProtA_14d - rep2	H3K4me3	GSM945321
110	wgEncodeUwHistoneH7esH3k04me3StdDiffa2dAlnRep1.sga	H7-hESC - H3K4me3 - diffProtA_2d - rep1	H3K4me3	GSM945191
111	wgEncodeUwHistoneH7esH3k04me3StdDiffa2dAlnRep2.sga	H7-hESC - H3K4me3 - diffProtA_2d - rep2	H3K4me3	GSM945191
112	wgEncodeUwHistoneH7esH3k04me3StdDiffa5dAlnRep1.sga	H7-hESC - H3K4me3 - diffProtA_5d - rep1	H3K4me3	GSM945322
113	wgEncodeUwHistoneH7esH3k04me3StdDiffa5dAlnRep2.sga	H7-hESC - H3K4me3 - diffProtA_5d - rep2	H3K4me3	GSM945322
114	wgEncodeUwHistoneH7esH3k04me3StdDiffa9dAlnRep1.sga	H7-hESC - H3K4me3 - diffProtA_9d - rep1	H3K4me3	GSM945190
115	wgEncodeUwHistoneH7esH3k04me3StdDiffa9dAlnRep2.sga	H7-hESC - H3K4me3 - diffProtA_9d - rep2	H3K4me3	GSM945190
116	wgEncodeUwHistoneH7esH3k4me3StdAlnRep1.sga	H7-hESC - H3K4me3 - None - rep1	H3K4me3	GSM945185
117	wgEncodeUwHistoneH7esH3k4me3StdAlnRep2.sga	H7-hESC - H3K4me3 - None - rep2	H3K4me3	GSM945185
118	wgEncodeUwHistoneHaspH3k4me3StdAlnRep1.sga	HA-sp - H3K4me3 - None - rep1	H3K4me3	GSM945249
119	wgEncodeUwHistoneHaspH3k4me3StdAlnRep2.sga	HA-sp - H3K4me3 - None - rep2	H3K4me3	GSM945249
120	wgEncodeUwHistoneHacH3k04me3StdAlnRep1.sga	HAc - H3K4me3 - None - rep1	H3K4me3	GSM945242
121	wgEncodeUwHistoneHacH3k04me3StdAlnRep2.sga	HAc - H3K4me3 - None - rep2	H3K4me3	GSM945242
122	wgEncodeUwHistoneHbmecH3k4me3StdAlnRep1.sga	HBMEC - H3K4me3 - None - rep1	H3K4me3	GSM945163
123	wgEncodeUwHistoneHbmecH3k4me3StdAlnRep2.sga	HBMEC - H3K4me3 - None - rep2	H3K4me3	GSM945163
124	wgEncodeUwHistoneHcfH3k4me3StdAlnRep1.sga	HCF - H3K4me3 - None - rep1	H3K4me3	GSM945312
125	wgEncodeUwHistoneHcfH3k4me3StdAlnRep2.sga	HCF - H3K4me3 - None - rep2	H3K4me3	GSM945312
126	wgEncodeUwHistoneHcfaaH3k4me3StdAlnRep1.sga	HCFaa - H3K4me3 - None - rep1	H3K4me3	GSM945310
127	wgEncodeUwHistoneHcmH3k4me3StdAlnRep1.sga	HCM - H3K4me3 - None - rep1	H3K4me3	GSM945308
128	wgEncodeUwHistoneHcmH3k4me3StdAlnRep2.sga	HCM - H3K4me3 - None - rep2	H3K4me3	GSM945308
129	wgEncodeUwHistoneHcpeH3k4me3StdAlnRep1.sga	HCPEpiC - H3K4me3 - None - rep1	H3K4me3	GSM945306
130	wgEncodeUwHistoneHcpeH3k4me3StdAlnRep2.sga	HCPEpiC - H3K4me3 - None - rep2	H3K4me3	GSM945306
131	wgEncodeUwHistoneHct116H3k4me3StdAlnRep1.sga	HCT-116 - H3K4me3 - None - rep1	H3K4me3	GSM945304
132	wgEncodeUwHistoneHct116H3k4me3StdAlnRep2.sga	HCT-116 - H3K4me3 - None - rep2	H3K4me3	GSM945304
133	wgEncodeUwHistoneHeeH3k4me3StdAlnRep1.sga	HEEpiC - H3K4me3 - None - rep1	H3K4me3	GSM945286
134	wgEncodeUwHistoneHeeH3k4me3StdAlnRep2.sga	HEEpiC - H3K4me3 - None - rep2	H3K4me3	GSM945286
135	wgEncodeUwHistoneHek293H3k4me3StdAlnRep1.sga	HEK293 - H3K4me3 - None - rep1	H3K4me3	GSM945288
136	wgEncodeUwHistoneHek293H3k4me3StdAlnRep2.sga	HEK293 - H3K4me3 - None - rep2	H3K4me3	GSM945288
137	wgEncodeUwHistoneHffH3k04me3StdAlnRep1.sga	HFF - H3K4me3 - None - rep1	H3K4me3	GSM945218
138	wgEncodeUwHistoneHffmycH3k04me3StdAlnRep1.sga	HFF-Myc - H3K4me3 - None - rep1	H3K4me3	GSM945239
139	wgEncodeUwHistoneHffmycH3k04me3StdAlnRep2.sga	HFF-Myc - H3K4me3 - None - rep2	H3K4me3	GSM945239
140	wgEncodeUwHistoneHl60H3k4me3StdAlnRep1.sga	HL-60 - H3K4me3 - None - rep1	H3K4me3	GSM945222
141	wgEncodeUwHistoneHl60H3k4me3StdAlnRep2.sga	HL-60 - H3K4me3 - None - rep2	H3K4me3	GSM945222
142	wgEncodeUwHistoneHmecH3k4me3StdAlnRep1.sga	HMEC - H3K4me3 - None - rep1	H3K4me3	GSM945159
143	wgEncodeUwHistoneHmecH3k4me3StdAlnRep2.sga	HMEC - H3K4me3 - None - rep2	H3K4me3	GSM945159
144	wgEncodeUwHistoneHmfH3k4me3StdAlnRep1.sga	HMF - H3K4me3 - None - rep1	H3K4me3	GSM945290
145	wgEncodeUwHistoneHmfH3k4me3StdAlnRep2.sga	HMF - H3K4me3 - None - rep2	H3K4me3	GSM945290
146	wgEncodeUwHistoneHpafH3k4me3StdAlnRep1.sga	HPAF - H3K4me3 - None - rep1	H3K4me3	GSM945292
147	wgEncodeUwHistoneHpafH3k4me3StdAlnRep2.sga	HPAF - H3K4me3 - None - rep2	H3K4me3	GSM945292
148	wgEncodeUwHistoneHpfH3k4me3StdAlnRep1.sga	HPF - H3K4me3 - None - rep1	H3K4me3	GSM945284
149	wgEncodeUwHistoneHpfH3k4me3StdAlnRep2.sga	HPF - H3K4me3 - None - rep2	H3K4me3	GSM945284
150	wgEncodeUwHistoneHreH3k4me3StdAlnRep1.sga	HRE - H3K4me3 - None - rep1	H3K4me3	GSM945276
151	wgEncodeUwHistoneHreH3k4me3StdAlnRep2.sga	HRE - H3K4me3 - None - rep2	H3K4me3	GSM945276
152	wgEncodeUwHistoneHrpeH3k4me3StdAlnRep1.sga	HRPEpiC - H3K4me3 - None - rep1	H3K4me3	GSM945271
153	wgEncodeUwHistoneHrpeH3k4me3StdAlnRep2.sga	HRPEpiC - H3K4me3 - None - rep2	H3K4me3	GSM945271
154	wgEncodeUwHistoneHuvecH3k4me3StdAlnRep1.sga	HUVEC - H3K4me3 - None - rep1	H3K4me3	GSM945181
155	wgEncodeUwHistoneHuvecH3k4me3StdAlnRep2.sga	HUVEC - H3K4me3 - None - rep2	H3K4me3	GSM945181
156	wgEncodeUwHistoneHvmfH3k4me3StdAlnRep1.sga	HVMF - H3K4me3 - None - rep1	H3K4me3	GSM945273
157	wgEncodeUwHistoneHvmfH3k4me3StdAlnRep2.sga	HVMF - H3K4me3 - None - rep2	H3K4me3	GSM945273
158	wgEncodeUwHistoneHelas3H3k4me3StdAlnRep1.sga	HeLa-S3 - H3K4me3 - None - rep1	H3K4me3	GSM945201
159	wgEncodeUwHistoneHelas3H3k4me3StdAlnRep2.sga	HeLa-S3 - H3K4me3 - None - rep2	H3K4me3	GSM945201
160	wgEncodeUwHistoneHepg2H3k4me3StdAlnRep1.sga	HepG2 - H3K4me3 - None - rep1	H3K4me3	GSM945182
161	wgEncodeUwHistoneHepg2H3k4me3StdAlnRep2.sga	HepG2 - H3K4me3 - None - rep2	H3K4me3	GSM945182
162	wgEncodeUwHistoneJurkatH3k4me3StdAlnRep1.sga	Jurkat - H3K4me3 - None - rep1	H3K4me3	GSM945267
163	wgEncodeUwHistoneJurkatH3k4me3StdAlnRep2.sga	Jurkat - H3K4me3 - None - rep2	H3K4me3	GSM945267
164	wgEncodeUwHistoneK562H3k04me3StdZnf2c10c5AlnRep1.sga	K562 - H3K4me3 - ZNF_knockout_2C10_C5 - rep1	H3K4me3	GSM945297
165	wgEncodeUwHistoneK562H3k04me3StdZnf2c10c5AlnRep2.sga	K562 - H3K4me3 - ZNF_knockout_2C10_C5 - rep2	H3K4me3	GSM945297
166	wgEncodeUwHistoneK562H3k04me3StdZnf4c50c4AlnRep1.sga	K562 - H3K4me3 - ZNF_knockout_4C50_C4 - rep1	H3K4me3	GSM945299
167	wgEncodeUwHistoneK562H3k04me3StdZnf4c50c4AlnRep2.sga	K562 - H3K4me3 - ZNF_knockout_4C50_C4 - rep2	H3K4me3	GSM945299
168	wgEncodeUwHistoneK562H3k04me3StdZnfa41c6AlnRep1.sga	K562 - H3K4me3 - ZNF_knockout_A4.1-C6 - rep1	H3K4me3	GSM945298
169	wgEncodeUwHistoneK562H3k04me3StdZnfa41c6AlnRep2.sga	K562 - H3K4me3 - ZNF_knockout_A4.1-C6 - rep2	H3K4me3	GSM945298
170	wgEncodeUwHistoneK562H3k04me3StdZnff41b2AlnRep1.sga	K562 - H3K4me3 - ZNF_knockout_F4.1-B2 - rep1	H3K4me3	GSM945278
171	wgEncodeUwHistoneK562H3k04me3StdZnff41b2AlnRep2.sga	K562 - H3K4me3 - ZNF_knockout_F4.1-B2 - rep2	H3K4me3	GSM945278
172	wgEncodeUwHistoneK562H3k04me3StdZnfp5AlnRep1.sga	K562 - H3K4me3 - ZNF_knockout_P5 - rep1	H3K4me3	GSM945279
173	wgEncodeUwHistoneK562H3k04me3StdZnfp5AlnRep2.sga	K562 - H3K4me3 - ZNF_knockout_P5 - rep2	H3K4me3	GSM945279
174	wgEncodeUwHistoneK562H3k4me3StdAlnRep1.sga	K562 - H3K4me3 - None - rep1	H3K4me3	GSM945165
175	wgEncodeUwHistoneK562H3k4me3StdAlnRep2.sga	K562 - H3K4me3 - None - rep2	H3K4me3	GSM945165
176	wgEncodeUwHistoneLncapH3k04me3StdAlnRep1.sga	LNCaP - H3K4me3 - None - rep1	H3K4me3	GSM945240
177	wgEncodeUwHistoneLncapH3k04me3StdAlnRep2.sga	LNCaP - H3K4me3 - None - rep2	H3K4me3	GSM945240
178	wgEncodeUwHistoneMcf7H3k04me3StdAlnRep2.sga	MCF-7 - H3K4me3 - None - rep2	H3K4me3	GSM945269
179	wgEncodeUwHistoneMcf7H3k4me3StdAlnRep1.sga	MCF-7 - H3K4me3 - None - rep1	H3K4me3	GSM945269
180	wgEncodeUwHistoneMonocd14ro1746H3k04me3StdAlnRep1.sga	Monocytes-CD14+_RO01746 - H3K4me3 - None - rep1	H3K4me3	GSM945225
181	wgEncodeUwHistoneNb4H3k4me3StdAlnRep1.sga	NB4 - H3K4me3 - None - rep1	H3K4me3	GSM945275
182	wgEncodeUwHistoneNhdfneoH3k4me3StdAlnRep1.sga	NHDF-neo - H3K4me3 - None - rep1	H3K4me3	GSM945251
183	wgEncodeUwHistoneNhdfneoH3k4me3StdAlnRep2.sga	NHDF-neo - H3K4me3 - None - rep2	H3K4me3	GSM945251
184	wgEncodeUwHistoneNhekH3k4me3StdAlnRep1.sga	NHEK - H3K4me3 - None - rep1	H3K4me3	GSM945175
185	wgEncodeUwHistoneNhekH3k4me3StdAlnRep2.sga	NHEK - H3K4me3 - None - rep2	H3K4me3	GSM945175
186	wgEncodeUwHistoneNhlfH3k04me3StdAlnRep1.sga	NHLF - H3K4me3 - None - rep1	H3K4me3	GSM945262
187	wgEncodeUwHistoneNhlfH3k04me3StdAlnRep2.sga	NHLF - H3K4me3 - None - rep2	H3K4me3	GSM945262
188	wgEncodeUwHistonePanc1H3k04me3StdAlnRep1.sga	PANC-1 - H3K4me3 - None - rep1	H3K4me3	GSM945261
189	wgEncodeUwHistonePanc1H3k04me3StdAlnRep2.sga	PANC-1 - H3K4me3 - None - rep2	H3K4me3	GSM945261
190	wgEncodeUwHistoneRptecH3k04me3StdAlnRep1.sga	RPTEC - H3K4me3 - None - rep1	H3K4me3	GSM945216
191	wgEncodeUwHistoneRptecH3k04me3StdAlnRep2.sga	RPTEC - H3K4me3 - None - rep2	H3K4me3	GSM945216
192	wgEncodeUwHistoneSaecH3k4me3StdAlnRep1.sga	SAEC - H3K4me3 - None - rep1	H3K4me3	GSM945199
193	wgEncodeUwHistoneSaecH3k4me3StdAlnRep2.sga	SAEC - H3K4me3 - None - rep2	H3K4me3	GSM945199
194	wgEncodeUwHistoneSknmcH3k04me3StdAlnRep1.sga	SK-N-MC - H3K4me3 - None - rep1	H3K4me3	GSM945264
195	wgEncodeUwHistoneSknmcH3k04me3StdAlnRep2.sga	SK-N-MC - H3K4me3 - None - rep2	H3K4me3	GSM945264
196	wgEncodeUwHistoneSknshraH3k4me3StdAlnRep1.sga	SK-N-SH_RA - H3K4me3 - None - rep1	H3K4me3	GSM945202
197	wgEncodeUwHistoneSknshraH3k4me3StdAlnRep2.sga	SK-N-SH_RA - H3K4me3 - None - rep2	H3K4me3	GSM945202
198	wgEncodeUwHistoneSkmcH3k04me3StdAlnRep1.sga	SKMC - H3K4me3 - None - rep1	H3K4me3	GSM945214
199	wgEncodeUwHistoneSkmcH3k04me3StdAlnRep2.sga	SKMC - H3K4me3 - None - rep2	H3K4me3	GSM945214
200	wgEncodeUwHistoneWerirb1H3k04me3StdAlnRep1.sga	WERI-Rb-1 - H3K4me3 - None - rep1	H3K4me3	GSM945263
201	wgEncodeUwHistoneWerirb1H3k04me3StdAlnRep2.sga	WERI-Rb-1 - H3K4me3 - None - rep2	H3K4me3	GSM945263
202	wgEncodeUwHistoneWi38H3k04me3OhtamStdAlnRep1.sga	WI-38 - H3K4me3 - 4OHTAM_20nM_72hr - rep1	H3K4me3	GSM945215
203	wgEncodeUwHistoneWi38H3k04me3OhtamStdAlnRep2.sga	WI-38 - H3K4me3 - 4OHTAM_20nM_72hr - rep2	H3K4me3	GSM945215
204	wgEncodeUwHistoneWi38H3k04me3StdAlnRep1.sga	WI-38 - H3K4me3 - None - rep1	H3K4me3	GSM945265
205	wgEncodeUwHistoneWi38H3k04me3StdAlnRep2.sga	WI-38 - H3K4me3 - None - rep2	H3K4me3	GSM945265
206	wgEncodeUwHistoneAg04450H3k09me3StdAlnRep1.sga	AG04450 - H3K9me3 - None - rep1	H3K9me3	GSM1010914
207	wgEncodeUwHistoneAg04450H3k09me3StdAlnRep2.sga	AG04450 - H3K9me3 - None - rep2	H3K9me3	GSM1010914
208	wgEncodeUwHistoneA549InputStdAlnRep1.sga	A549 - Input - None - rep1	Input	GSM945243
209	wgEncodeUwHistoneAg04449InputStdAlnRep1.sga	AG04449 - Input - None - rep1	Input	GSM945176
210	wgEncodeUwHistoneAg04450InputStdAlnRep1.sga	AG04450 - Input - None - rep1	Input	GSM945169
211	wgEncodeUwHistoneAg09309InputStdAlnRep1.sga	AG09309 - Input - None - rep1	Input	GSM945167
212	wgEncodeUwHistoneAg09319InputStdAlnRep1.sga	AG09319 - Input - None - rep1	Input	GSM945173
213	wgEncodeUwHistoneAg10803InputStdAlnRep1.sga	AG10803 - Input - None - rep1	Input	GSM945171
214	wgEncodeUwHistoneAoafInputStdAlnRep1.sga	AoAF - Input - None - rep1	Input	GSM945164
215	wgEncodeUwHistoneBe2cInputStdAlnRep1.sga	BE2_C - Input - None - rep1	Input	GSM945283
216	wgEncodeUwHistoneBjInputStdAlnRep1.sga	BJ - Input - None - rep1	Input	GSM945235
217	wgEncodeUwHistoneCd20ro01778InputStdAlnRep1.sga	CD20+_RO01778 - Input - None - rep1	Input	GSM945197
218	wgEncodeUwHistoneCd20ro01794InputStdAlnRep1.sga	CD20+_RO01794 - Input - None - rep1	Input	GSM945195
219	wgEncodeUwHistoneCaco2InputStdAlnRep1.sga	Caco-2 - Input - None - rep1	Input	GSM945236
220	wgEncodeUwHistoneGm06990InputStdAlnRep1.sga	GM06990 - Input - None - rep1	Input	GSM945237
221	wgEncodeUwHistoneGm12864InputStdAlnRep1.sga	GM12864 - Input - None - rep1	Input	GSM945238
222	wgEncodeUwHistoneGm12865InputStdAlnRep1.sga	GM12865 - Input - None - rep1	Input	GSM945234
223	wgEncodeUwHistoneGm12875InputStdAlnRep1.sga	GM12875 - Input - None - rep1	Input	GSM945260
224	wgEncodeUwHistoneGm12878InputStdAlnRep1.sga	GM12878 - Input - None - rep1	Input	GSM945259
225	wgEncodeUwHistoneH7esInputStdAlnRep1.sga	H7-hESC - Input - None - rep1	Input	GSM945186
226	wgEncodeUwHistoneH7esInputStdDiffa14dAlnRep1.sga	H7-hESC - Input - diffProtA_14d - rep1	Input	GSM945319
227	wgEncodeUwHistoneH7esInputStdDiffa2dAlnRep1.sga	H7-hESC - Input - diffProtA_2d - rep1	Input	GSM945189
228	wgEncodeUwHistoneH7esInputStdDiffa5dAlnRep1.sga	H7-hESC - Input - diffProtA_5d - rep1	Input	GSM945194
229	wgEncodeUwHistoneH7esInputStdDiffa9dAlnRep1.sga	H7-hESC - Input - diffProtA_9d - rep1	Input	GSM945193
230	wgEncodeUwHistoneHaspInputStdAlnRep1.sga	HA-sp - Input - None - rep1	Input	GSM945248
231	wgEncodeUwHistoneHacInputStdAlnRep1.sga	HAc - Input - None - rep1	Input	GSM945227
232	wgEncodeUwHistoneHbmecInputStdAlnRep1.sga	HBMEC - Input - None - rep1	Input	GSM945311
233	wgEncodeUwHistoneHcfInputStdAlnRep1.sga	HCF - Input - None - rep1	Input	GSM945309
234	wgEncodeUwHistoneHcfaaInputStdAlnRep1.sga	HCFaa - Input - None - rep1	Input	GSM945307
235	wgEncodeUwHistoneHcmInputStdAlnRep1.sga	HCM - Input - None - rep1	Input	GSM945305
236	wgEncodeUwHistoneHcpeInputStdAlnRep1.sga	HCPEpiC - Input - None - rep1	Input	GSM945303
237	wgEncodeUwHistoneHct116InputStdAlnRep1.sga	HCT-116 - Input - None - rep1	Input	GSM945287
238	wgEncodeUwHistoneHeeInputStdAlnRep1.sga	HEEpiC - Input - None - rep1	Input	GSM945289
239	wgEncodeUwHistoneHek293InputStdAlnRep1.sga	HEK293 - Input - None - rep1	Input	GSM945256
240	wgEncodeUwHistoneHffInputStdAlnRep1.sga	HFF - Input - None - rep1	Input	GSM945219
241	wgEncodeUwHistoneHffmycInputStdAlnRep1.sga	HFF-Myc - Input - None - rep1	Input	GSM945281
242	wgEncodeUwHistoneHl60InputStdAlnRep1.sga	HL-60 - Input - None - rep1	Input	GSM945255
243	wgEncodeUwHistoneHmecInputStdAlnRep1.sga	HMEC - Input - None - rep1	Input	GSM945258
244	wgEncodeUwHistoneHmfInputStdAlnRep1.sga	HMF - Input - None - rep1	Input	GSM945293
245	wgEncodeUwHistoneHpafInputStdAlnRep1.sga	HPAF - Input - None - rep1	Input	GSM945285
246	wgEncodeUwHistoneHpfInputStdAlnRep1.sga	HPF - Input - None - rep1	Input	GSM945270
247	wgEncodeUwHistoneHreInputStdAlnRep1.sga	HRE - Input - None - rep1	Input	GSM945257
248	wgEncodeUwHistoneHrpeInputStdAlnRep1.sga	HRPEpiC - Input - None - rep1	Input	GSM945272
249	wgEncodeUwHistoneHuvecInputStdAlnRep1.sga	HUVEC - Input - None - rep1	Input	GSM945254
250	wgEncodeUwHistoneHvmfInputStdAlnRep1.sga	HVMF - Input - None - rep1	Input	GSM945266
251	wgEncodeUwHistoneHelas3InputStdAlnRep1.sga	HeLa-S3 - Input - None - rep1	Input	GSM945253
252	wgEncodeUwHistoneHepg2InputStdAlnRep1.sga	HepG2 - Input - None - rep1	Input	GSM945291
253	wgEncodeUwHistoneJurkatInputStdAlnRep1.sga	Jurkat - Input - None - rep1	Input	GSM945268
254	wgEncodeUwHistoneK562InputStdAlnRep1.sga	K562 - Input - None - rep1	Input	GSM945294
255	wgEncodeUwHistoneLncapInputStdAlnRep1.sga	LNCaP - Input - None - rep1	Input	GSM945282
256	wgEncodeUwHistoneMcf7InputStdAlnRep1.sga	MCF-7 - Input - None - rep1	Input	GSM945274
257	wgEncodeUwHistoneMonocd14ro1746InputStdAlnRep1.sga	Monocytes-CD14+_RO01746 - Input - None - rep1	Input	GSM945224
258	wgEncodeUwHistoneNb4InputStdAlnRep1.sga	NB4 - Input - None - rep1	Input	GSM945252
259	wgEncodeUwHistoneNhdfneoInputStdAlnRep1.sga	NHDF-neo - Input - None - rep1	Input	GSM945250
260	wgEncodeUwHistoneNhekInputStdAlnRep1.sga	NHEK - Input - None - rep1	Input	GSM945313
261	wgEncodeUwHistoneNhlfInputStdAlnRep1.sga	NHLF - Input - None - rep1	Input	GSM945280
262	wgEncodeUwHistonePanc1InputStdAlnRep1.sga	PANC-1 - Input - None - rep1	Input	GSM945246
263	wgEncodeUwHistoneRptecInputStdAlnRep1.sga	RPTEC - Input - None - rep1	Input	GSM945217
264	wgEncodeUwHistoneSaecInputStdAlnRep1.sga	SAEC - Input - None - rep1	Input	GSM945314
265	wgEncodeUwHistoneSknmcInputStdAlnRep1.sga	SK-N-MC - Input - None - rep1	Input	GSM945247
266	wgEncodeUwHistoneSknshraInputStdAlnRep1.sga	SK-N-SH_RA - Input - None - rep1	Input	GSM945317
267	wgEncodeUwHistoneSkmcInputStdAlnRep1.sga	SKMC - Input - None - rep1	Input	GSM945161
268	wgEncodeUwHistoneWerirb1InputStdAlnRep1.sga	WERI-Rb-1 - Input - None - rep1	Input	GSM945318
269	wgEncodeUwHistoneWi38InputOhtamStdAlnRep1.sga	WI-38 - Input - 4OHTAM_20nM_72hr - rep1	Input	GSM945223
270	wgEncodeUwHistoneWi38InputStdAlnRep1.sga	WI-38 - Input - None - rep1	Input	GSM945245

BAM files were converted to bed using bamToBed v2.12.0 (bedtools). SGA conversion was carried out using bed2sga.pl (ChIP-Seq v. 1.5.3).

• Thurman RE, Rynes E, Humbert R, Vierstra J, Maurano MT, Haugen E, Sheffield NC, Stergachis AB, Wang H, Vernot B, Garg K, John S, Sandstrom R, Bates D, Boatman L, Canfield TK, Diegel M, Dunn D, Ebersol AK, Frum T, Giste E, Johnson AK, Johnson EM, Kutyavin T, Lajoie B, Lee BK, Lee K, London D, Lotakis D, Neph S, Neri F, Nguyen ED, Qu H, Reynolds AP, Roach V, Safi A, Sanchez ME, Sanyal A, Shafer A, Simon JM, Song L, Vong S, Weaver M, Yan Y, Zhang Z, Zhang Z, Lenhard B, Tewari M, Dorschner MO, Hansen RS, Navas PA, Stamatoyannopoulos G, Iyer VR, Lieb JD, Sunyaev SR, Akey JM, Sabo PJ, Kaul R, Furey TS, Dekker J, Crawford GE, Stamatoyannopoulos JA
  The accessible chromatin landscape of the human genome. Nature. 2012 Sep 6;489(7414):75-82. doi: 10.1038/nature11232. 22955617
• GEO series GSE29692: DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington