ChIP-seq data:
Filename | Description | Feature | GEO-ID | |
1 | GSM2067350.sga | H1ES|KAP1 | KAP1 | GSM2067350 |
2 | GSM2466444.sga | 293T|Input | Input | GSM2466444 |
3 | GSM2466445.sga | 293T|HKR1 | HKR1 | GSM2466445 |
4 | GSM2466446.sga | 293T|PRDM9 | PRDM9 | GSM2466446 |
5 | GSM2466447.sga | 293T|RBAK | RBAK | GSM2466447 |
6 | GSM2466448.sga | 293T|ZFP14 | ZFP14 | GSM2466448 |
7 | GSM2466449.sga | 293T|ZFP1 | ZFP1 | GSM2466449 |
8 | GSM2466450.sga | 293T|ZFP57|rep1 | ZFP57 | GSM2466450 |
9 | GSM2466451.sga | 293T|ZFP57|rep2 | ZFP57 | GSM2466451 |
10 | GSM2466452.sga | 293T|ZFP69B | ZFP69B | GSM2466452 |
11 | GSM2466453.sga | 293T|ZFP69 | ZFP69 | GSM2466453 |
12 | GSM2466454.sga | 293T|ZFP90 | ZFP90 | GSM2466454 |
13 | GSM2466455.sga | 293T|ZIK1 | ZIK1 | GSM2466455 |
14 | GSM2466456.sga | 293T|ZIM2_1 | ZIM2_1 | GSM2466456 |
15 | GSM2466457.sga | 293T|ZIM3 | ZIM3 | GSM2466457 |
16 | GSM2466458.sga | 293T|ZKSCAN2 | ZKSCAN2 | GSM2466458 |
17 | GSM2466461.sga | 293T|ZKSCAN3 | ZKSCAN3 | GSM2466461 |
18 | GSM2466463.sga | 293T|ZKSCAN5 | ZKSCAN5 | GSM2466463 |
19 | GSM2466465.sga | 293T|ZNF100|rep1 | ZNF100 | GSM2466465 |
20 | GSM2466467.sga | 293T|ZNF100|rep2 | ZNF100 | GSM2466467 |
21 | GSM2466469.sga | 293T|ZNF100|rep3 | ZNF100 | GSM2466469 |
22 | GSM2466470.sga | 293T|ZNF101 | ZNF101 | GSM2466470 |
23 | GSM2466471.sga | 293T|ZNF10 | ZNF10 | GSM2466471 |
24 | GSM2466472.sga | 293T|ZNF114 | ZNF114 | GSM2466472 |
25 | GSM2466473.sga | 293T|ZNF124 | ZNF124 | GSM2466473 |
26 | GSM2466474.sga | 293T|ZNF12 | ZNF12 | GSM2466474 |
27 | GSM2466475.sga | 293T|ZNF132 | ZNF132 | GSM2466475 |
28 | GSM2466476.sga | 293T|ZNF133 | ZNF133 | GSM2466476 |
29 | GSM2466477.sga | 293T|ZNF135 | ZNF135 | GSM2466477 |
30 | GSM2466478.sga | 293T|ZNF136 | ZNF136 | GSM2466478 |
31 | GSM2466479.sga | 293T|ZNF141 | ZNF141 | GSM2466479 |
32 | GSM2466480.sga | 293T|ZNF154 | ZNF154 | GSM2466480 |
33 | GSM2466481.sga | 293T|ZNF157 | ZNF157 | GSM2466481 |
34 | GSM2466482.sga | 293T|ZNF169|rep1 | ZNF169 | GSM2466482 |
35 | GSM2466483.sga | 293T|ZNF169|rep2 | ZNF169 | GSM2466483 |
36 | GSM2466484.sga | 293T|ZNF17 | ZNF17 | GSM2466484 |
37 | GSM2466485.sga | 293T|ZNF180 | ZNF180 | GSM2466485 |
38 | GSM2466486.sga | 293T|ZNF181 | ZNF181 | GSM2466486 |
39 | GSM2466487.sga | 293T|ZNF182 | ZNF182 | GSM2466487 |
40 | GSM2466488.sga | 293T|ZNF184 | ZNF184 | GSM2466488 |
41 | GSM2466489.sga | 293T|ZNF189 | ZNF189 | GSM2466489 |
42 | GSM2466490.sga | 293T|ZNF18 | ZNF18 | GSM2466490 |
43 | GSM2466491.sga | 293T|ZNF197 | ZNF197 | GSM2466491 |
44 | GSM2466492.sga | 293T|ZNF19 | ZNF19 | GSM2466492 |
45 | GSM2466493.sga | 293T|ZNF202 | ZNF202 | GSM2466493 |
46 | GSM2466494.sga | 293T|ZNF205 | ZNF205 | GSM2466494 |
47 | GSM2466495.sga | 293T|ZNF211|rep1 | ZNF211 | GSM2466495 |
48 | GSM2466496.sga | 293T|ZNF211|rep2 | ZNF211 | GSM2466496 |
49 | GSM2466497.sga | 293T|ZNF212 | ZNF212 | GSM2466497 |
50 | GSM2466498.sga | 293T|ZNF214 | ZNF214 | GSM2466498 |
51 | GSM2466499.sga | 293T|ZNF222 | ZNF222 | GSM2466499 |
52 | GSM2466500.sga | 293T|ZNF223 | ZNF223 | GSM2466500 |
53 | GSM2466501.sga | 293T|ZNF224 | ZNF224 | GSM2466501 |
54 | GSM2466502.sga | 293T|ZNF225 | ZNF225 | GSM2466502 |
55 | GSM2466503.sga | 293T|ZNF235 | ZNF235 | GSM2466503 |
56 | GSM2466504.sga | 293T|ZNF248 | ZNF248 | GSM2466504 |
57 | GSM2466505.sga | 293T|ZNF254 | ZNF254 | GSM2466505 |
58 | GSM2466506.sga | 293T|ZNF257 | ZNF257 | GSM2466506 |
59 | GSM2466507.sga | 293T|ZNF25 | ZNF25 | GSM2466507 |
60 | GSM2466508.sga | 293T|ZNF263 | ZNF263 | GSM2466508 |
61 | GSM2466509.sga | 293T|ZNF264 | ZNF264 | GSM2466509 |
62 | GSM2466510.sga | 293T|ZNF266 | ZNF266 | GSM2466510 |
63 | GSM2466511.sga | 293T|ZNF267 | ZNF267 | GSM2466511 |
64 | GSM2466512.sga | 293T|ZNF26 | ZNF26 | GSM2466512 |
65 | GSM2466513.sga | 293T|ZNF273 | ZNF273 | GSM2466513 |
66 | GSM2466514.sga | 293T|ZNF274 | ZNF274 | GSM2466514 |
67 | GSM2466515.sga | 293T|ZNF282|rep1 | ZNF282 | GSM2466515 |
68 | GSM2466516.sga | 293T|ZNF282|rep2 | ZNF282 | GSM2466516 |
69 | GSM2466517.sga | 293T|ZNF283 | ZNF283 | GSM2466517 |
70 | GSM2466518.sga | 293T|ZNF284 | ZNF284 | GSM2466518 |
71 | GSM2466519.sga | 293T|ZNF285 | ZNF285 | GSM2466519 |
72 | GSM2466520.sga | 293T|ZNF287 | ZNF287 | GSM2466520 |
73 | GSM2466521.sga | 293T|ZNF28 | ZNF28 | GSM2466521 |
74 | GSM2466522.sga | 293T|ZNF2 | ZNF2 | GSM2466522 |
75 | GSM2466523.sga | 293T|ZNF300 | ZNF300 | GSM2466523 |
76 | GSM2466524.sga | 293T|ZNF302 | ZNF302 | GSM2466524 |
77 | GSM2466525.sga | 293T|ZNF304 | ZNF304 | GSM2466525 |
78 | GSM2466526.sga | 293T|ZNF30 | ZNF30 | GSM2466526 |
79 | GSM2466527.sga | 293T|ZNF311 | ZNF311 | GSM2466527 |
80 | GSM2466528.sga | 293T|ZNF317 | ZNF317 | GSM2466528 |
81 | GSM2466529.sga | 293T|ZNF320 | ZNF320 | GSM2466529 |
82 | GSM2466530.sga | 293T|ZNF324B | ZNF324B | GSM2466530 |
83 | GSM2466531.sga | 293T|ZNF324 | ZNF324 | GSM2466531 |
84 | GSM2466532.sga | 293T|ZNF331 | ZNF331 | GSM2466532 |
85 | GSM2466533.sga | 293T|ZNF333 | ZNF333 | GSM2466533 |
86 | GSM2466534.sga | 293T|ZNF334 | ZNF334 | GSM2466534 |
87 | GSM2466535.sga | 293T|ZNF337 | ZNF337 | GSM2466535 |
88 | GSM2466536.sga | 293T|ZNF33A|rep1 | ZNF33A | GSM2466536 |
89 | GSM2466537.sga | 293T|ZNF33A|rep2 | ZNF33A | GSM2466537 |
90 | GSM2466538.sga | 293T|ZNF33B | ZNF33B | GSM2466538 |
91 | GSM2466539.sga | 293T|ZNF343 | ZNF343 | GSM2466539 |
92 | GSM2466540.sga | 293T|ZNF354A | ZNF354A | GSM2466540 |
93 | GSM2466541.sga | 293T|ZNF354B | ZNF354B | GSM2466541 |
94 | GSM2466542.sga | 293T|ZNF382|rep1 | ZNF382 | GSM2466542 |
95 | GSM2466543.sga | 293T|ZNF382|rep2 | ZNF382 | GSM2466543 |
96 | GSM2466544.sga | 293T|ZNF383 | ZNF383 | GSM2466544 |
97 | GSM2466545.sga | 293T|ZNF398 | ZNF398 | GSM2466545 |
98 | GSM2466546.sga | 293T|ZNF3 | ZNF3 | GSM2466546 |
99 | GSM2466547.sga | 293T|ZNF417 | ZNF417 | GSM2466547 |
100 | GSM2466548.sga | 293T|ZNF418 | ZNF418 | GSM2466548 |
101 | GSM2466549.sga | 293T|ZNF419|rep1 | ZNF419 | GSM2466549 |
102 | GSM2466550.sga | 293T|ZNF419|rep2 | ZNF419 | GSM2466550 |
103 | GSM2466551.sga | 293T|ZNF425 | ZNF425 | GSM2466551 |
104 | GSM2466552.sga | 293T|ZNF429 | ZNF429 | GSM2466552 |
105 | GSM2466553.sga | 293T|ZNF430 | ZNF430 | GSM2466553 |
106 | GSM2466554.sga | 293T|ZNF431 | ZNF431 | GSM2466554 |
107 | GSM2466555.sga | 293T|ZNF432 | ZNF432 | GSM2466555 |
108 | GSM2466556.sga | 293T|ZNF433 | ZNF433 | GSM2466556 |
109 | GSM2466557.sga | 293T|ZNF439 | ZNF439 | GSM2466557 |
110 | GSM2466558.sga | 293T|ZNF440 | ZNF440 | GSM2466558 |
111 | GSM2466559.sga | 293T|ZNF441 | ZNF441 | GSM2466559 |
112 | GSM2466560.sga | 293T|ZNF442 | ZNF442 | GSM2466560 |
113 | GSM2466561.sga | 293T|ZNF443 | ZNF443 | GSM2466561 |
114 | GSM2466562.sga | 293T|ZNF445 | ZNF445 | GSM2466562 |
115 | GSM2466563.sga | 293T|ZNF44 | ZNF44 | GSM2466563 |
116 | GSM2466564.sga | 293T|ZNF454 | ZNF454 | GSM2466564 |
117 | GSM2466565.sga | 293T|ZNF45 | ZNF45 | GSM2466565 |
118 | GSM2466566.sga | 293T|ZNF460 | ZNF460 | GSM2466566 |
119 | GSM2466567.sga | 293T|ZNF468 | ZNF468 | GSM2466567 |
120 | GSM2466568.sga | 293T|ZNF479 | ZNF479 | GSM2466568 |
121 | GSM2466569.sga | 293T|ZNF480 | ZNF480 | GSM2466569 |
122 | GSM2466570.sga | 293T|ZNF483 | ZNF483 | GSM2466570 |
123 | GSM2466571.sga | 293T|ZNF484 | ZNF484 | GSM2466571 |
124 | GSM2466572.sga | 293T|ZNF485 | ZNF485 | GSM2466572 |
125 | GSM2466573.sga | 293T|ZNF486 | ZNF486 | GSM2466573 |
126 | GSM2466574.sga | 293T|ZNF487 | ZNF487 | GSM2466574 |
127 | GSM2466575.sga | 293T|ZNF492 | ZNF492 | GSM2466575 |
128 | GSM2466576.sga | 293T|ZNF496 | ZNF496 | GSM2466576 |
129 | GSM2466577.sga | 293T|ZNF506 | ZNF506 | GSM2466577 |
130 | GSM2466578.sga | 293T|ZNF519 | ZNF519 | GSM2466578 |
131 | GSM2466579.sga | 293T|ZNF525 | ZNF525 | GSM2466579 |
132 | GSM2466580.sga | 293T|ZNF527 | ZNF527 | GSM2466580 |
133 | GSM2466581.sga | 293T|ZNF528 | ZNF528 | GSM2466581 |
134 | GSM2466582.sga | 293T|ZNF529 | ZNF529 | GSM2466582 |
135 | GSM2466583.sga | 293T|ZNF530 | ZNF530 | GSM2466583 |
136 | GSM2466584.sga | 293T|ZNF534 | ZNF534 | GSM2466584 |
137 | GSM2466585.sga | 293T|ZNF540 | ZNF540 | GSM2466585 |
138 | GSM2466586.sga | 293T|ZNF543 | ZNF543 | GSM2466586 |
139 | GSM2466587.sga | 293T|ZNF547 | ZNF547 | GSM2466587 |
140 | GSM2466588.sga | 293T|ZNF548 | ZNF548 | GSM2466588 |
141 | GSM2466589.sga | 293T|ZNF549|rep1 | ZNF549 | GSM2466589 |
142 | GSM2466590.sga | 293T|ZNF549|rep2 | ZNF549 | GSM2466590 |
143 | GSM2466591.sga | 293T|ZNF550 | ZNF550 | GSM2466591 |
144 | GSM2466592.sga | 293T|ZNF552 | ZNF552 | GSM2466592 |
145 | GSM2466593.sga | 293T|ZNF555 | ZNF555 | GSM2466593 |
146 | GSM2466594.sga | 293T|ZNF557 | ZNF557 | GSM2466594 |
147 | GSM2466595.sga | 293T|ZNF558 | ZNF558 | GSM2466595 |
148 | GSM2466596.sga | 293T|ZNF561 | ZNF561 | GSM2466596 |
149 | GSM2466597.sga | 293T|ZNF562 | ZNF562 | GSM2466597 |
150 | GSM2466598.sga | 293T|ZNF564 | ZNF564 | GSM2466598 |
151 | GSM2466599.sga | 293T|ZNF565 | ZNF565 | GSM2466599 |
152 | GSM2466600.sga | 293T|ZNF566 | ZNF566 | GSM2466600 |
153 | GSM2466601.sga | 293T|ZNF567 | ZNF567 | GSM2466601 |
154 | GSM2466602.sga | 293T|ZNF570 | ZNF570 | GSM2466602 |
155 | GSM2466603.sga | 293T|ZNF571 | ZNF571 | GSM2466603 |
156 | GSM2466604.sga | 293T|ZNF573 | ZNF573 | GSM2466604 |
157 | GSM2466605.sga | 293T|ZNF582 | ZNF582 | GSM2466605 |
158 | GSM2466606.sga | 293T|ZNF584 | ZNF584 | GSM2466606 |
159 | GSM2466607.sga | 293T|ZNF585A | ZNF585A | GSM2466607 |
160 | GSM2466608.sga | 293T|ZNF587 | ZNF587 | GSM2466608 |
161 | GSM2466609.sga | 293T|ZNF605 | ZNF605 | GSM2466609 |
162 | GSM2466610.sga | 293T|ZNF610 | ZNF610 | GSM2466610 |
163 | GSM2466611.sga | 293T|ZNF611 | ZNF611 | GSM2466611 |
164 | GSM2466612.sga | 293T|ZNF613 | ZNF613 | GSM2466612 |
165 | GSM2466613.sga | 293T|ZNF614 | ZNF614 | GSM2466613 |
166 | GSM2466614.sga | 293T|ZNF615 | ZNF615 | GSM2466614 |
167 | GSM2466615.sga | 293T|ZNF616 | ZNF616 | GSM2466615 |
168 | GSM2466616.sga | 293T|ZNF619 | ZNF619 | GSM2466616 |
169 | GSM2466617.sga | 293T|ZNF620 | ZNF620 | GSM2466617 |
170 | GSM2466618.sga | 293T|ZNF621 | ZNF621 | GSM2466618 |
171 | GSM2466619.sga | 293T|ZNF626 | ZNF626 | GSM2466619 |
172 | GSM2466620.sga | 293T|ZNF627 | ZNF627 | GSM2466620 |
173 | GSM2466621.sga | 293T|ZNF641 | ZNF641 | GSM2466621 |
174 | GSM2466622.sga | 293T|ZNF649 | ZNF649 | GSM2466622 |
175 | GSM2466623.sga | 293T|ZNF662 | ZNF662 | GSM2466623 |
176 | GSM2466624.sga | 293T|ZNF667 | ZNF667 | GSM2466624 |
177 | GSM2466625.sga | 293T|ZNF669 | ZNF669 | GSM2466625 |
178 | GSM2466626.sga | 293T|ZNF671 | ZNF671 | GSM2466626 |
179 | GSM2466627.sga | 293T|ZNF674 | ZNF674 | GSM2466627 |
180 | GSM2466628.sga | 293T|ZNF675 | ZNF675 | GSM2466628 |
181 | GSM2466629.sga | 293T|ZNF680|rep1 | ZNF680 | GSM2466629 |
182 | GSM2466630.sga | 293T|ZNF680|rep2 | ZNF680 | GSM2466630 |
183 | GSM2466631.sga | 293T|ZNF681 | ZNF681 | GSM2466631 |
184 | GSM2466632.sga | 293T|ZNF682|rep1 | ZNF682 | GSM2466632 |
185 | GSM2466633.sga | 293T|ZNF682|rep2 | ZNF682 | GSM2466633 |
186 | GSM2466634.sga | 293T|ZNF684 | ZNF684 | GSM2466634 |
187 | GSM2466635.sga | 293T|ZNF695 | ZNF695 | GSM2466635 |
188 | GSM2466636.sga | 293T|ZNF69 | ZNF69 | GSM2466636 |
189 | GSM2466637.sga | 293T|ZNF701 | ZNF701 | GSM2466637 |
190 | GSM2466638.sga | 293T|ZNF705G | ZNF705G | GSM2466638 |
191 | GSM2466639.sga | 293T|ZNF707 | ZNF707 | GSM2466639 |
192 | GSM2466640.sga | 293T|ZNF708 | ZNF708 | GSM2466640 |
193 | GSM2466641.sga | 293T|ZNF714 | ZNF714 | GSM2466641 |
194 | GSM2466642.sga | 293T|ZNF716 | ZNF716 | GSM2466642 |
195 | GSM2466643.sga | 293T|ZNF730 | ZNF730 | GSM2466643 |
196 | GSM2466644.sga | 293T|ZNF736 | ZNF736 | GSM2466644 |
197 | GSM2466645.sga | 293T|ZNF737 | ZNF737 | GSM2466645 |
198 | GSM2466646.sga | 293T|ZNF749 | ZNF749 | GSM2466646 |
199 | GSM2466647.sga | 293T|ZNF74 | ZNF74 | GSM2466647 |
200 | GSM2466648.sga | 293T|ZNF75D|rep1 | ZNF75D | GSM2466648 |
201 | GSM2466649.sga | 293T|ZNF75D|rep2 | ZNF75D | GSM2466649 |
202 | GSM2466650.sga | 293T|ZNF764 | ZNF764 | GSM2466650 |
203 | GSM2466651.sga | 293T|ZNF765 | ZNF765 | GSM2466651 |
204 | GSM2466652.sga | 293T|ZNF766 | ZNF766 | GSM2466652 |
205 | GSM2466653.sga | 293T|ZNF776 | ZNF776 | GSM2466653 |
206 | GSM2466654.sga | 293T|ZNF777 | ZNF777 | GSM2466654 |
207 | GSM2466655.sga | 293T|ZNF778 | ZNF778 | GSM2466655 |
208 | GSM2466656.sga | 293T|ZNF77 | ZNF77 | GSM2466656 |
209 | GSM2466657.sga | 293T|ZNF780A | ZNF780A | GSM2466657 |
210 | GSM2466658.sga | 293T|ZNF782 | ZNF782 | GSM2466658 |
211 | GSM2466659.sga | 293T|ZNF783 | ZNF783 | GSM2466659 |
212 | GSM2466660.sga | 293T|ZNF785 | ZNF785 | GSM2466660 |
213 | GSM2466661.sga | 293T|ZNF786 | ZNF786 | GSM2466661 |
214 | GSM2466662.sga | 293T|ZNF789 | ZNF789 | GSM2466662 |
215 | GSM2466663.sga | 293T|ZNF790 | ZNF790 | GSM2466663 |
216 | GSM2466664.sga | 293T|ZNF791 | ZNF791 | GSM2466664 |
217 | GSM2466665.sga | 293T|ZNF792 | ZNF792 | GSM2466665 |
218 | GSM2466666.sga | 293T|ZNF793|rep1 | ZNF793 | GSM2466666 |
219 | GSM2466667.sga | 293T|ZNF793|rep2 | ZNF793 | GSM2466667 |
220 | GSM2466668.sga | 293T|ZNF799 | ZNF799 | GSM2466668 |
221 | GSM2466669.sga | 293T|ZNF79 | ZNF79 | GSM2466669 |
222 | GSM2466670.sga | 293T|ZNF7 | ZNF7 | GSM2466670 |
223 | GSM2466671.sga | 293T|ZNF805 | ZNF805 | GSM2466671 |
224 | GSM2466672.sga | 293T|ZNF808 | ZNF808 | GSM2466672 |
225 | GSM2466673.sga | 293T|ZNF816 | ZNF816 | GSM2466673 |
226 | GSM2466674.sga | 293T|ZNF81 | ZNF81 | GSM2466674 |
227 | GSM2466675.sga | 293T|ZNF823 | ZNF823 | GSM2466675 |
228 | GSM2466676.sga | 293T|ZNF846 | ZNF846 | GSM2466676 |
229 | GSM2466677.sga | 293T|ZNF84 | ZNF84 | GSM2466677 |
230 | GSM2466678.sga | 293T|ZNF85 | ZNF85 | GSM2466678 |
231 | GSM2466679.sga | 293T|ZNF860 | ZNF860 | GSM2466679 |
232 | GSM2466680.sga | 293T|ZNF879 | ZNF879 | GSM2466680 |
233 | GSM2466681.sga | 293T|ZNF880 | ZNF880 | GSM2466681 |
234 | GSM2466682.sga | 293T|ZNF891 | ZNF891 | GSM2466682 |
235 | GSM2466683.sga | 293T|ZNF8 | ZNF8 | GSM2466683 |
236 | GSM2466684.sga | 293T|ZNF90 | ZNF90 | GSM2466684 |
237 | GSM2466685.sga | 293T|ZNF93 | ZNF93 | GSM2466685 |
ChIP-seq peaks files:
The sample description field is composed of 2 - sometimes 3 - values separared by a '|' character, corresponding to i) the cell line from which the data where generated, ii) the ChIP target and iii) the replicate number (if the condition was replicated).
FASTQ files were extracted from SRA files using fastq-dump (SRA toolkit v2.5.0) and mapped to the hg19 genome using Bowtie2 v0.12.9. SAM files were then converted into bam using samtools v0.1.14 and to bed using bamToBed v2.12.0 (bedtools). SGA conversion was carried out using bed2sga.pl (ChIP-Seq v. 1.5.2). Peak files provided by the authors were downloaded in BED format and then converted to SGA using bed2sga.pl (ChIP-Seq v. 1.5.2) and to FPS using sga2fps.pl (ChIP-Seq v. 1.5.2). The original peak scores assigned by MACS were conserved and are stored as SGA 6th field.