ChIP-seq data:
Filename | Description | Feature | GEO-ID | |
1 | GSM1164203.sga | GM18505 - H3K4me1 | H3K4me1 | GSM1164203 |
2 | GSM1164204.sga | GM18507 - H3K4me1 | H3K4me1 | GSM1164204 |
3 | GSM1164205.sga | GM18508 - H3K4me1 | H3K4me1 | GSM1164205 |
4 | GSM1164206.sga | GM18516 - H3K4me1 | H3K4me1 | GSM1164206 |
5 | GSM1164207.sga | GM18522 - H3K4me1 | H3K4me1 | GSM1164207 |
6 | GSM1164208.sga | GM19141 - H3K4me1 | H3K4me1 | GSM1164208 |
7 | GSM1164209.sga | GM19193 - H3K4me1 | H3K4me1 | GSM1164209 |
8 | GSM1164210.sga | GM19204 - H3K4me1 | H3K4me1 | GSM1164210 |
9 | GSM1164211.sga | GM19238 - H3K4me1 | H3K4me1 | GSM1164211 |
10 | GSM1164212.sga | GM19239 - H3K4me1 | H3K4me1 | GSM1164212 |
11 | GSM1164213.sga | GM18505 - H3K4me3 | H3K4me3 | GSM1164213 |
12 | GSM1164214.sga | GM18507 - H3K4me3 | H3K4me3 | GSM1164214 |
13 | GSM1164215.sga | GM18508 - H3K4me3 | H3K4me3 | GSM1164215 |
14 | GSM1164216.sga | GM18516 - H3K4me3 | H3K4me3 | GSM1164216 |
15 | GSM1164217.sga | GM18522 - H3K4me3 | H3K4me3 | GSM1164217 |
16 | GSM1164218.sga | GM19141 - H3K4me3 | H3K4me3 | GSM1164218 |
17 | GSM1164219.sga | GM19193 - H3K4me3 | H3K4me3 | GSM1164219 |
18 | GSM1164220.sga | GM19204 - H3K4me3 | H3K4me3 | GSM1164220 |
19 | GSM1164221.sga | GM19238 - H3K4me3 | H3K4me3 | GSM1164221 |
20 | GSM1164222.sga | GM19239 - H3K4me3 | H3K4me3 | GSM1164222 |
21 | GSM1164223.sga | GM18505 - H3K27ac | H3K27ac | GSM1164223 |
22 | GSM1164224.sga | GM18507 - H3K27ac | H3K27ac | GSM1164224 |
23 | GSM1164225.sga | GM18508 - H3K27ac | H3K27ac | GSM1164225 |
24 | GSM1164226.sga | GM18516 - H3K27ac | H3K27ac | GSM1164226 |
25 | GSM1164227.sga | GM18522 - H3K27ac | H3K27ac | GSM1164227 |
26 | GSM1164228.sga | GM19141 - H3K27ac | H3K27ac | GSM1164228 |
27 | GSM1164229.sga | GM19193 - H3K27ac | H3K27ac | GSM1164229 |
28 | GSM1164230.sga | GM19204 - H3K27ac | H3K27ac | GSM1164230 |
29 | GSM1164231.sga | GM19238 - H3K27ac | H3K27ac | GSM1164231 |
30 | GSM1164232.sga | GM19239 - H3K27ac | H3K27ac | GSM1164232 |
31 | GSM1164233.sga | GM18505 - H3K27me3 | H3K27me3 | GSM1164233 |
32 | GSM1164234.sga | GM18507 - H3K27me3 | H3K27me3 | GSM1164234 |
33 | GSM1164235.sga | GM18508 - H3K27me3 | H3K27me3 | GSM1164235 |
34 | GSM1164236.sga | GM18516 - H3K27me3 | H3K27me3 | GSM1164236 |
35 | GSM1164237.sga | GM18522 - H3K27me3 | H3K27me3 | GSM1164237 |
36 | GSM1164238.sga | GM19141 - H3K27me3 | H3K27me3 | GSM1164238 |
37 | GSM1164239.sga | GM19193 - H3K27me3 | H3K27me3 | GSM1164239 |
38 | GSM1164240.sga | GM19204 - H3K27me3 | H3K27me3 | GSM1164240 |
39 | GSM1164241.sga | GM19238 - H3K27me3 | H3K27me3 | GSM1164241 |
40 | GSM1164242.sga | GM19239 - H3K27me3 | H3K27me3 | GSM1164242 |
41 | GSM1164243.sga | GM18505 - PolII | PolII | GSM1164243 |
42 | GSM1164244.sga | GM18507 - PolII | PolII | GSM1164244 |
43 | GSM1164245.sga | GM18508 - PolII | PolII | GSM1164245 |
44 | GSM1164246.sga | GM18516 - PolII | PolII | GSM1164246 |
45 | GSM1164247.sga | GM18522 - PolII | PolII | GSM1164247 |
46 | GSM1164248.sga | GM19141 - PolII | PolII | GSM1164248 |
47 | GSM1164249.sga | GM19193 - PolII | PolII | GSM1164249 |
48 | GSM1164250.sga | GM19204 - PolII | PolII | GSM1164250 |
49 | GSM1164251.sga | GM19238 - PolII | PolII | GSM1164251 |
50 | GSM1164252.sga | GM19239 - PolII | PolII | GSM1164252 |
FASTQ files were extracted from SRA files using fastq-dump (SRA toolkit v2.5.0) and mapped to the hg19 genome using Bowtie v0.12.8. SAM files were then converted into bam using samtools v0.1.14 and to bed using bamToBed v2.12.0 (bedtools). SGA conversion was carried out using bed2sga.pl (ChIP-Seq v. 1.5.2).