Adult breast.

Description

This samples serie was produced as part of the RoadMap Project.

Source

Files downloaded from GEO FTP server: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/roadmapepigenomics/by_sample/
Input file format: BED

Samples

From H. sapiens (Feb 2009 GRCh37/hg19).

ChIP-seq data:

	Filename	Description	Feature	GEO-ID
1	GSM1127089_UCSF-UBC.Breast_Fibroblast_Primary_Cells.Input.RM071.sga	Breast Fibroblast Primary Cells\|Input	Input	GSM1127089
2	GSM693278_UCSF-UBC.Breast_Luminal_Epithelial_Cells.H3K27me3.RM080.sga	Breast Luminal Epithelial Cells\|H3K27me3	H3K27me3	GSM693278
3	GSM669597_UCSF-UBC.Breast_Luminal_Epithelial_Cells.H3K36me3.RM080.sga	Breast Luminal Epithelial Cells\|H3K36me3	H3K36me3	GSM669597
4	GSM669595_UCSF-UBC.Breast_Luminal_Epithelial_Cells.H3K4me1.RM080.sga	Breast Luminal Epithelial Cells\|H3K4me1	H3K4me1	GSM669595
5	GSM669596_UCSF-UBC.Breast_Luminal_Epithelial_Cells.H3K9me3.RM080.sga	Breast Luminal Epithelial Cells\|H3K9me3	H3K9me3	GSM669596
6	GSM959124_UCSF-UBC.Breast_Luminal_Epithelial_Cells.Input.RM080.sga	Breast Luminal Epithelial Cells\|Input	Input	GSM959124
7	GSM613872_UCSF-UBC.Breast_Myoepithelial_Cells.H3K27me3.RM066.sga	Breast Myoepithelial Cells\|H3K27me3\|rep 1	H3K27me3	GSM613872
8	GSM613887_UCSF-UBC.Breast_Myoepithelial_Cells.H3K27me3.RM080.sga	Breast Myoepithelial Cells\|H3K27me3\|rep 2	H3K27me3	GSM613887
9	GSM613873_UCSF-UBC.Breast_Myoepithelial_Cells.H3K36me3.RM066.sga	Breast Myoepithelial Cells\|H3K36me3\|rep 1	H3K36me3	GSM613873
10	GSM613888_UCSF-UBC.Breast_Myoepithelial_Cells.H3K36me3.RM080.sga	Breast Myoepithelial Cells\|H3K36me3\|rep 2	H3K36me3	GSM613888
11	GSM613870_UCSF-UBC.Breast_Myoepithelial_Cells.H3K4me1.RM066.sga	Breast Myoepithelial Cells\|H3K4me1\|rep 1	H3K4me1	GSM613870
12	GSM613885_UCSF-UBC.Breast_Myoepithelial_Cells.H3K4me1.RM080.sga	Breast Myoepithelial Cells\|H3K4me1\|rep 2	H3K4me1	GSM613885
13	GSM613869_UCSF-UBC.Breast_Myoepithelial_Cells.H3K4me3.RM066.sga	Breast Myoepithelial Cells\|H3K4me3\|rep 1	H3K4me3	GSM613869
14	GSM693277_UCSF-UBC.Breast_Myoepithelial_Cells.H3K4me3.RM080.sga	Breast Myoepithelial Cells\|H3K4me3\|rep 2	H3K4me3	GSM693277
15	GSM613889_UCSF-UBC.Breast_Myoepithelial_Cells.H3K9ac.RM080.sga	Breast Myoepithelial Cells\|H3K9ac\|rep 1	H3K9ac	GSM613889
16	GSM693276_UCSF-UBC.Breast_Myoepithelial_Cells.H3K9ac.RM066.sga	Breast Myoepithelial Cells\|H3K9ac\|rep 2	H3K9ac	GSM693276
17	GSM613871_UCSF-UBC.Breast_Myoepithelial_Cells.H3K9me3.RM066.sga	Breast Myoepithelial Cells\|H3K9me3\|rep 1	H3K9me3	GSM613871
18	GSM613886_UCSF-UBC.Breast_Myoepithelial_Cells.H3K9me3.RM080.sga	Breast Myoepithelial Cells\|H3K9me3\|rep 2	H3K9me3	GSM613886
19	GSM613891_UCSF-UBC.Breast_Myoepithelial_Cells.Input.RM066.sga	Breast Myoepithelial Cells\|Input\|rep 1	Input	GSM613891
20	GSM613897_UCSF-UBC.Breast_Myoepithelial_Cells.Input.RM080.sga	Breast Myoepithelial Cells\|Input\|rep 2	Input	GSM613897
21	GSM669594_UCSF-UBC.Breast_vHMEC.H3K27me3.RM035.sga	Breast vHMEC\|H3K27me3	H3K27me3	GSM669594
22	GSM693275_UCSF-UBC.Breast_vHMEC.H3K36me3.RM035.sga	Breast vHMEC\|H3K36me3	H3K36me3	GSM693275
23	GSM613868_UCSF-UBC.Breast_vHMEC.H3K4me1.RM035.HS1994.sga	Breast vHMEC\|H3K4me1\|rep 1	H3K4me1	GSM613868
24	GSM613876_UCSF-UBC.Breast_vHMEC.H3K4me1.RM035.HS2618.sga	Breast vHMEC\|H3K4me1\|rep 2	H3K4me1	GSM613876
25	GSM613874_UCSF-UBC.Breast_vHMEC.H3K4me3.RM035.HS2615.sga	Breast vHMEC\|H3K4me3	H3K4me3	GSM613874
26	GSM613875_UCSF-UBC.Breast_vHMEC.H3K9me3.RM035.HS2617.sga	Breast vHMEC\|H3K9me3	H3K9me3	GSM613875
27	GSM613890_UCSF-UBC.Breast_vHMEC.Input.RM035.HS1995.sga	Breast vHMEC\|Input\|rep 1	Input	GSM613890
28	GSM613892_UCSF-UBC.Breast_vHMEC.Input.RM035.HS2620.sga	Breast vHMEC\|Input\|rep 2	Input	GSM613892

DNase FAIRE data:

	Filename	Description	Feature	GEO-ID
1	GSM1024609_UW.Breast_vHMEC.Digital_Genomic_Footprinting.RM035.DGF.DS18406.sga	Breast vHMEC\|DNase-HS	DNase-HS	GSM1024609
2	GSM753973_UW.Breast_vHMEC.ChromatinAccessibility.RM035.DS18406.sga	Breast vHMEC\|DNase-seq\|rep 1	DNase-seq	GSM753973
3	GSM753974_UW.Breast_vHMEC.ChromatinAccessibility.RM035.DS18438.sga	Breast vHMEC\|DNase-seq\|rep 2	DNase-seq	GSM753974

Technical Notes

BED files were downloaded from the FTP and converted in SGA format using bed2sga (ChIP-seq).

References