Adult exocrine and endocrine glands.

Description

This samples serie was produced as part of the RoadMap Project.

Source

Files downloaded from GEO FTP server: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/roadmapepigenomics/by_sample/
Input file format: BED

Samples

From H. sapiens (Feb 2009 GRCh37/hg19).

ChIP-seq data:

	Filename	Description	Feature	GEO-ID
1	GSM1013126_UCSD.Adrenal_Gland.H3K27ac.STL002.sga	Adrenal Gland\|H3K27ac\|rep 1	H3K27ac	GSM1013126
2	GSM896163_UCSD.Adrenal_Gland.H3K27ac.STL003.sga	Adrenal Gland\|H3K27ac\|rep 2	H3K27ac	GSM896163
3	GSM1059439_UCSD.Adrenal_Gland.H3K36me3.STL002.sga	Adrenal Gland\|H3K36me3\|rep 1	H3K36me3	GSM1059439
4	GSM956015_UCSD.Adrenal_Gland.H3K36me3.STL003.sga	Adrenal Gland\|H3K36me3\|rep 2	H3K36me3	GSM956015
5	GSM1059447_UCSD.Adrenal_Gland.H3K4me1.STL002.sga	Adrenal Gland\|H3K4me1\|rep 1	H3K4me1	GSM1059447
6	GSM1059449_UCSD.Adrenal_Gland.H3K4me1.STL003.sga	Adrenal Gland\|H3K4me1\|rep 2	H3K4me1	GSM1059449
7	GSM910583_UCSD.Adrenal_Gland.H3K9me3.STL003.sga	Adrenal Gland\|H3K9me3	H3K9me3	GSM910583
8	GSM1013168_UCSD.Adrenal_Gland.Input.STL002.sga	Adrenal Gland\|Input\|rep 1	Input	GSM1013168
9	GSM896167_UCSD.Adrenal_Gland.Input.STL003.sga	Adrenal Gland\|Input\|rep 2	Input	GSM896167
10	GSM1013129_UCSD.Pancreas.H3K27ac.STL002.sga	Pancreas\|H3K27ac\|rep 1	H3K27ac	GSM1013129
11	GSM906397_UCSD.Pancreas.H3K27ac.STL003.sga	Pancreas\|H3K27ac\|rep 2	H3K27ac	GSM906397
12	GSM910563_UCSD.Pancreas.H3K27me3.STL003.sga	Pancreas\|H3K27me3	H3K27me3	GSM910563
13	GSM1127182_UCSD.Pancreas.H3K36me3.STL002.sga	Pancreas\|H3K36me3\|rep 1	H3K36me3	GSM1127182
14	GSM910570_UCSD.Pancreas.H3K36me3.STL003.sga	Pancreas\|H3K36me3\|rep 2	H3K36me3	GSM910570
15	GSM1013149_UCSD.Pancreas.H3K4me1.STL002.sga	Pancreas\|H3K4me1\|rep 1	H3K4me1	GSM1013149
16	GSM910576_UCSD.Pancreas.H3K4me1.STL003.sga	Pancreas\|H3K4me1\|rep 2	H3K4me1	GSM910576
17	GSM910581_UCSD.Pancreas.H3K4me3.STL003.sga	Pancreas\|H3K4me3	H3K4me3	GSM910581
18	GSM1013163_UCSD.Pancreas.H3K9me3.STL002.sga	Pancreas\|H3K9me3\|rep 1	H3K9me3	GSM1013163
19	GSM910586_UCSD.Pancreas.H3K9me3.STL003.sga	Pancreas\|H3K9me3\|rep 2	H3K9me3	GSM910586
20	GSM1013172_UCSD.Pancreas.Input.STL002.sga	Pancreas\|Input\|rep 1	Input	GSM1013172
21	GSM906419_UCSD.Pancreas.Input.STL003.sga	Pancreas\|Input\|rep 2	Input	GSM906419
22	GSM1013132_UCSD.Spleen.H3K27ac.STL002.sga	Spleen\|H3K27ac\|rep 1	H3K27ac	GSM1013132
23	GSM1120338_UCSD.Spleen.H3K27ac.STL001.sga	Spleen\|H3K27ac\|rep 2	H3K27ac	GSM1120338
24	GSM906398_UCSD.Spleen.H3K27ac.STL003.sga	Spleen\|H3K27ac\|rep 3	H3K27ac	GSM906398
25	GSM906400_UCSD.Spleen.H3K27me3.STL003.sga	Spleen\|H3K27me3	H3K27me3	GSM906400
26	GSM1120348_UCSD.Spleen.H3K36me3.STL002.sga	Spleen\|H3K36me3\|rep 1	H3K36me3	GSM1120348
27	GSM910571_UCSD.Spleen.H3K36me3.STL003.sga	Spleen\|H3K36me3\|rep 2	H3K36me3	GSM910571
28	GSM1120351_UCSD.Spleen.H3K4me1.STL002.sga	Spleen\|H3K4me1\|rep 1	H3K4me1	GSM1120351
29	GSM910577_UCSD.Spleen.H3K4me1.STL003.sga	Spleen\|H3K4me1\|rep 2	H3K4me1	GSM910577
30	GSM910582_UCSD.Spleen.H3K4me3.STL003.sga	Spleen\|H3K4me3	H3K4me3	GSM910582
31	GSM910588_UCSD.Spleen.H3K9me3.STL003.sga	Spleen\|H3K9me3	H3K9me3	GSM910588
32	GSM1013174_UCSD.Spleen.Input.STL002.sga	Spleen\|Input\|rep 1	Input	GSM1013174
33	GSM1127188_UCSD.Spleen.Input.STL001.sga	Spleen\|Input\|rep 2	Input	GSM1127188
34	GSM906423_UCSD.Spleen.Input.STL003.sga	Spleen\|Input\|rep 3	Input	GSM906423
35	GSM1013125_UCSD.Thymus.H3K27ac.STL001.sga	Thymus\|H3K27ac	H3K27ac	GSM1013125
36	GSM1013142_UCSD.Thymus.H3K36me3.STL001.sga	Thymus\|H3K36me3	H3K36me3	GSM1013142
37	GSM1059446_UCSD.Thymus.H3K4me1.STL001.sga	Thymus\|H3K4me1	H3K4me1	GSM1059446
38	GSM1013161_UCSD.Thymus.H3K9me3.STL001.sga	Thymus\|H3K9me3	H3K9me3	GSM1013161
39	GSM956030_UCSD.Thymus.Input.STL001.sga	Thymus\|Input	Input	GSM956030

DNase FAIRE data:

	Filename	Description	Feature	GEO-ID
1	GSM1027326_UW.Pancreas.ChromatinAccessibility.STL003.DNase.DS20753.sga	Pancreas\|DNase-seq\|rep 1	DNase-seq	GSM1027326
2	GSM1027335_UW.Pancreas.ChromatinAccessibility.STL002.DNase.DS20842.sga	Pancreas\|DNase-seq\|rep 2	DNase-seq	GSM1027335

Technical Notes

BED files were downloaded from the FTP and converted in SGA format using bed2sga (ChIP-seq).

References