Adult fat tissue.

Description

This samples serie was produced as part of the RoadMap Project.

Source

Files downloaded from GEO FTP server: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/roadmapepigenomics/by_sample/
Input file format: BED

Samples

From H. sapiens (Feb 2009 GRCh37/hg19).

ChIP-seq data:

	Filename	Description	Feature	GEO-ID
1	GSM621420_BI.Adipose_Derived_Mesenchymal_Stem_Cell_Cultured_Cells.H3K27me3.1.sga	Adipose Derived Mesenchymal Stem Cell Cultured Cells\|H3K27me3\|rep 1	H3K27me3	GSM621420
2	GSM772821_BI.Adipose_Derived_Mesenchymal_Stem_Cell_Cultured_Cells.H3K27me3.92.sga	Adipose Derived Mesenchymal Stem Cell Cultured Cells\|H3K27me3\|rep 2	H3K27me3	GSM772821
3	GSM621446_BI.Adipose_Derived_Mesenchymal_Stem_Cell_Cultured_Cells.H3K36me3.1.sga	Adipose Derived Mesenchymal Stem Cell Cultured Cells\|H3K36me3\|rep 1	H3K36me3	GSM621446
4	GSM772763_BI.Adipose_Derived_Mesenchymal_Stem_Cell_Cultured_Cells.H3K36me3.93.sga	Adipose Derived Mesenchymal Stem Cell Cultured Cells\|H3K36me3\|rep 2	H3K36me3	GSM772763
5	GSM772820_BI.Adipose_Derived_Mesenchymal_Stem_Cell_Cultured_Cells.H3K36me3.92.sga	Adipose Derived Mesenchymal Stem Cell Cultured Cells\|H3K36me3\|rep 3	H3K36me3	GSM772820
6	GSM621418_BI.Adipose_Derived_Mesenchymal_Stem_Cell_Cultured_Cells.H3K4me1.1.sga	Adipose Derived Mesenchymal Stem Cell Cultured Cells\|H3K4me1\|rep 1	H3K4me1	GSM621418
7	GSM772748_BI.Adipose_Derived_Mesenchymal_Stem_Cell_Cultured_Cells.H3K4me1.92.sga	Adipose Derived Mesenchymal Stem Cell Cultured Cells\|H3K4me1\|rep 2	H3K4me1	GSM772748
8	GSM772762_BI.Adipose_Derived_Mesenchymal_Stem_Cell_Cultured_Cells.H3K4me1.93.sga	Adipose Derived Mesenchymal Stem Cell Cultured Cells\|H3K4me1\|rep 3	H3K4me1	GSM772762
9	GSM621458_BI.Adipose_Derived_Mesenchymal_Stem_Cell_Cultured_Cells.H3K4me3.1.sga	Adipose Derived Mesenchymal Stem Cell Cultured Cells\|H3K4me3\|rep 1	H3K4me3	GSM621458
10	GSM772747_BI.Adipose_Derived_Mesenchymal_Stem_Cell_Cultured_Cells.H3K4me3.92.sga	Adipose Derived Mesenchymal Stem Cell Cultured Cells\|H3K4me3\|rep 2	H3K4me3	GSM772747
11	GSM772761_BI.Adipose_Derived_Mesenchymal_Stem_Cell_Cultured_Cells.H3K4me3.93.sga	Adipose Derived Mesenchymal Stem Cell Cultured Cells\|H3K4me3\|rep 3	H3K4me3	GSM772761
12	GSM670020_BI.Adipose_Derived_Mesenchymal_Stem_Cell_Cultured_Cells.H3K9ac.1.sga	Adipose Derived Mesenchymal Stem Cell Cultured Cells\|H3K9ac\|rep 1	H3K9ac	GSM670020
13	GSM772760_BI.Adipose_Derived_Mesenchymal_Stem_Cell_Cultured_Cells.H3K9ac.93.sga	Adipose Derived Mesenchymal Stem Cell Cultured Cells\|H3K9ac\|rep 2	H3K9ac	GSM772760
14	GSM772822_BI.Adipose_Derived_Mesenchymal_Stem_Cell_Cultured_Cells.H3K9ac.92.sga	Adipose Derived Mesenchymal Stem Cell Cultured Cells\|H3K9ac\|rep 3	H3K9ac	GSM772822
15	GSM621398_BI.Adipose_Derived_Mesenchymal_Stem_Cell_Cultured_Cells.H3K9me3.1.sga	Adipose Derived Mesenchymal Stem Cell Cultured Cells\|H3K9me3\|rep 1	H3K9me3	GSM621398
16	GSM772759_BI.Adipose_Derived_Mesenchymal_Stem_Cell_Cultured_Cells.H3K9me3.93.sga	Adipose Derived Mesenchymal Stem Cell Cultured Cells\|H3K9me3\|rep 2	H3K9me3	GSM772759
17	GSM772823_BI.Adipose_Derived_Mesenchymal_Stem_Cell_Cultured_Cells.H3K9me3.92.sga	Adipose Derived Mesenchymal Stem Cell Cultured Cells\|H3K9me3\|rep 3	H3K9me3	GSM772823
18	GSM621443_BI.Adipose_Derived_Mesenchymal_Stem_Cell_Cultured_Cells.Input.1.sga	Adipose Derived Mesenchymal Stem Cell Cultured Cells\|Input\|rep 1	WCE	GSM621443
19	GSM772739_BI.Adipose_Derived_Mesenchymal_Stem_Cell_Cultured_Cells.Input.93.sga	Adipose Derived Mesenchymal Stem Cell Cultured Cells\|Input\|rep 2	WCE	GSM772739
20	GSM772765_BI.Adipose_Derived_Mesenchymal_Stem_Cell_Cultured_Cells.Input.92.sga	Adipose Derived Mesenchymal Stem Cell Cultured Cells\|Input\|rep 3	WCE	GSM772765
21	GSM916066_BI.Adipose_Nuclei.H3K27ac.7.sga	Adipose Nuclei\|H3K27ac	H3K27ac	GSM916066
22	GSM669930_BI.Adipose_Nuclei.H3K27me3.92.sga	Adipose Nuclei\|H3K27me3\|rep 1	H3K27me3	GSM669930
23	GSM670017_BI.Adipose_Nuclei.H3K27me3.95.sga	Adipose Nuclei\|H3K27me3\|rep 2	H3K27me3	GSM670017
24	GSM670035_BI.Adipose_Nuclei.H3K27me3.94.sga	Adipose Nuclei\|H3K27me3\|rep 3	H3K27me3	GSM670035
25	GSM772771_BI.Adipose_Nuclei.H3K27me3.93.sga	Adipose Nuclei\|H3K27me3\|rep 4	H3K27me3	GSM772771
26	GSM916055_BI.Adipose_Nuclei.H3K27me3.7.sga	Adipose Nuclei\|H3K27me3\|rep 5	H3K27me3	GSM916055
27	GSM621461_BI.Adipose_Nuclei.H3K36me3.7.sga	Adipose Nuclei\|H3K36me3\|rep 1	H3K36me3	GSM621461
28	GSM669952_BI.Adipose_Nuclei.H3K36me3.92.sga	Adipose Nuclei\|H3K36me3\|rep 2	H3K36me3	GSM669952
29	GSM669979_BI.Adipose_Nuclei.H3K36me3.94.sga	Adipose Nuclei\|H3K36me3\|rep 3	H3K36me3	GSM669979
30	GSM669997_BI.Adipose_Nuclei.H3K36me3.95.sga	Adipose Nuclei\|H3K36me3\|rep 4	H3K36me3	GSM669997
31	GSM670014_BI.Adipose_Nuclei.H3K36me3.93.sga	Adipose Nuclei\|H3K36me3\|rep 5	H3K36me3	GSM670014
32	GSM621425_BI.Adipose_Nuclei.H3K4me1.7.sga	Adipose Nuclei\|H3K4me1\|rep 1	H3K4me1	GSM621425
33	GSM669908_BI.Adipose_Nuclei.H3K4me1.92.sga	Adipose Nuclei\|H3K4me1\|rep 2	H3K4me1	GSM669908
34	GSM669975_BI.Adipose_Nuclei.H3K4me1.94.sga	Adipose Nuclei\|H3K4me1\|rep 3	H3K4me1	GSM669975
35	GSM670045_BI.Adipose_Nuclei.H3K4me1.93.sga	Adipose Nuclei\|H3K4me1\|rep 4	H3K4me1	GSM670045
36	GSM772757_BI.Adipose_Nuclei.H3K4me1.95.sga	Adipose Nuclei\|H3K4me1\|rep 5	H3K4me1	GSM772757
37	GSM621435_BI.Adipose_Nuclei.H3K4me3.7.sga	Adipose Nuclei\|H3K4me3\|rep 1	H3K4me3	GSM621435
38	GSM669925_BI.Adipose_Nuclei.H3K4me3.92.sga	Adipose Nuclei\|H3K4me3\|rep 2	H3K4me3	GSM669925
39	GSM669988_BI.Adipose_Nuclei.H3K4me3.95.sga	Adipose Nuclei\|H3K4me3\|rep 3	H3K4me3	GSM669988
40	GSM669998_BI.Adipose_Nuclei.H3K4me3.93.sga	Adipose Nuclei\|H3K4me3\|rep 4	H3K4me3	GSM669998
41	GSM670041_BI.Adipose_Nuclei.H3K4me3.94.sga	Adipose Nuclei\|H3K4me3\|rep 5	H3K4me3	GSM670041
42	GSM669904_BI.Adipose_Nuclei.H3K9ac.92.sga	Adipose Nuclei\|H3K9ac\|rep 1	H3K9ac	GSM669904
43	GSM669922_BI.Adipose_Nuclei.H3K9ac.93.sga	Adipose Nuclei\|H3K9ac\|rep 2	H3K9ac	GSM669922
44	GSM669938_BI.Adipose_Nuclei.H3K9ac.94.sga	Adipose Nuclei\|H3K9ac\|rep 3	H3K9ac	GSM669938
45	GSM670027_BI.Adipose_Nuclei.H3K9ac.95.sga	Adipose Nuclei\|H3K9ac\|rep 4	H3K9ac	GSM670027
46	GSM772802_BI.Adipose_Nuclei.H3K9ac.7.sga	Adipose Nuclei\|H3K9ac\|rep 5	H3K9ac	GSM772802
47	GSM621391_BI.Adipose_Nuclei.H3K9me3.7.sga	Adipose Nuclei\|H3K9me3\|rep 1	H3K9me3	GSM621391
48	GSM669933_BI.Adipose_Nuclei.H3K9me3.95.sga	Adipose Nuclei\|H3K9me3\|rep 2	H3K9me3	GSM669933
49	GSM669968_BI.Adipose_Nuclei.H3K9me3.92.sga	Adipose Nuclei\|H3K9me3\|rep 3	H3K9me3	GSM669968
50	GSM669976_BI.Adipose_Nuclei.H3K9me3.94.sga	Adipose Nuclei\|H3K9me3\|rep 4	H3K9me3	GSM669976
51	GSM669981_BI.Adipose_Nuclei.H3K9me3.93.sga	Adipose Nuclei\|H3K9me3\|rep 5	H3K9me3	GSM669981
52	GSM621401_BI.Adipose_Nuclei.Input.7.sga	Adipose Nuclei\|Input\|rep 1	WCE	GSM621401
53	GSM669934_BI.Adipose_Nuclei.Input.92.sga	Adipose Nuclei\|Input\|rep 2	WCE	GSM669934
54	GSM669940_BI.Adipose_Nuclei.Input.94.sga	Adipose Nuclei\|Input\|rep 3	WCE	GSM669940
55	GSM669984_BI.Adipose_Nuclei.Input.95.sga	Adipose Nuclei\|Input\|rep 4	WCE	GSM669984
56	GSM670043_BI.Adipose_Nuclei.Input.93.sga	Adipose Nuclei\|Input\|rep 5	WCE	GSM670043
57	GSM906394_UCSD.Adipose_Tissue.H3K27ac.STL003.sga	Adipose Tissue\|H3K27ac	H3K27ac	GSM906394
58	GSM906416_UCSD.Adipose_Tissue.Input.STL003.sga	Adipose Tissue\|Input	Input	GSM906416
59	GSM772744_BI.Mesenchymal_Stem_Cell_Derived_Adipocyte_Cultured_Cells.H3K27me3.93.sga	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells\|H3K27me3\|rep 1	H3K27me3	GSM772744
60	GSM772819_BI.Mesenchymal_Stem_Cell_Derived_Adipocyte_Cultured_Cells.H3K27me3.92.sga	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells\|H3K27me3\|rep 2	H3K27me3	GSM772819
61	GSM772743_BI.Mesenchymal_Stem_Cell_Derived_Adipocyte_Cultured_Cells.H3K36me3.93.sga	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells\|H3K36me3\|rep 1	H3K36me3	GSM772743
62	GSM772818_BI.Mesenchymal_Stem_Cell_Derived_Adipocyte_Cultured_Cells.H3K36me3.92.sga	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells\|H3K36me3\|rep 2	H3K36me3	GSM772818
63	GSM772745_BI.Mesenchymal_Stem_Cell_Derived_Adipocyte_Cultured_Cells.H3K4me1.93.sga	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells\|H3K4me1\|rep 1	H3K4me1	GSM772745
64	GSM772816_BI.Mesenchymal_Stem_Cell_Derived_Adipocyte_Cultured_Cells.H3K4me1.92.sga	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells\|H3K4me1\|rep 2	H3K4me1	GSM772816
65	GSM772746_BI.Mesenchymal_Stem_Cell_Derived_Adipocyte_Cultured_Cells.H3K4me3.93.sga	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells\|H3K4me3\|rep 1	H3K4me3	GSM772746
66	GSM772817_BI.Mesenchymal_Stem_Cell_Derived_Adipocyte_Cultured_Cells.H3K4me3.92.sga	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells\|H3K4me3\|rep 2	H3K4me3	GSM772817
67	GSM772741_BI.Mesenchymal_Stem_Cell_Derived_Adipocyte_Cultured_Cells.H3K9ac.93.sga	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells\|H3K9ac\|rep 1	H3K9ac	GSM772741
68	GSM772812_BI.Mesenchymal_Stem_Cell_Derived_Adipocyte_Cultured_Cells.H3K9ac.92.sga	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells\|H3K9ac\|rep 2	H3K9ac	GSM772812
69	GSM772742_BI.Mesenchymal_Stem_Cell_Derived_Adipocyte_Cultured_Cells.H3K9me3.93.sga	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells\|H3K9me3\|rep 1	H3K9me3	GSM772742
70	GSM772813_BI.Mesenchymal_Stem_Cell_Derived_Adipocyte_Cultured_Cells.H3K9me3.92.sga	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells\|H3K9me3\|rep 2	H3K9me3	GSM772813
71	GSM772740_BI.Mesenchymal_Stem_Cell_Derived_Adipocyte_Cultured_Cells.Input.93.sga	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells\|Input\|rep 1	WCE	GSM772740
72	GSM772764_BI.Mesenchymal_Stem_Cell_Derived_Adipocyte_Cultured_Cells.Input.92.sga	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells\|Input\|rep 2	WCE	GSM772764

Technical Notes

BED files were downloaded from the FTP and converted in SGA format using bed2sga (ChIP-seq).

References