Fetal heart.

Description

This samples serie was produced as part of the RoadMap Project.

Source

Files downloaded from GEO FTP server: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/roadmapepigenomics/by_sample/
Input file format: BED

Samples

From H. sapiens (Feb 2009 GRCh37/hg19).

ChIP-seq data:

	Filename	Description	Feature	GEO-ID
1	GSM621450_BI.Fetal_Heart.H3K27me3.UW_H-22727.sga	Fetal Heart\|H3K27me3	H3K27me3	GSM621450
2	GSM621392_BI.Fetal_Heart.H3K36me3.UW_H-22727.sga	Fetal Heart\|H3K36me3	H3K36me3	GSM621392
3	GSM706848_BI.Fetal_Heart.H3K4me1.H-23524.sga	Fetal Heart\|H3K4me1\|rep 1	H3K4me1	GSM706848
4	GSM772732_BI.Fetal_Heart.H3K4me1.UW_H23914.sga	Fetal Heart\|H3K4me1\|rep 2	H3K4me1	GSM772732
5	GSM772735_BI.Fetal_Heart.H3K4me3.UW_H23914.sga	Fetal Heart\|H3K4me3	H3K4me3	GSM772735
6	GSM706849_BI.Fetal_Heart.H3K9ac.H-23524.sga	Fetal Heart\|H3K9ac	H3K9ac	GSM706849
7	GSM621434_BI.Fetal_Heart.H3K9me3.UW_H-22727.sga	Fetal Heart\|H3K9me3	H3K9me3	GSM621434
8	GSM621396_BI.Fetal_Heart.Input.UW_H-22727.sga	Fetal Heart\|Input\|rep 1	WCE	GSM621396
9	GSM706856_BI.Fetal_Heart.Input.H-23468.sga	Fetal Heart\|Input\|rep 2	WCE	GSM706856

DNase FAIRE data:

	Filename	Description	Feature	GEO-ID
1	GSM723023_UW.Fetal_Heart.Digital_Genomic_Footprinting.H-22662.DGF.DS12531.sga	Fetal Heart\|DNase-HS	DNase-HS	GSM723023
2	GSM530654_UW.Fetal_Heart.ChromatinAccessibility.H-22662.DS12531.sga	Fetal Heart\|DNase-seq\|rep 1	DNase-seq	GSM530654
3	GSM817220_UW.Fetal_Heart.ChromatinAccessibility.H-23744.DS19431.sga	Fetal Heart\|DNase-seq\|rep 10	DNase-seq	GSM817220
4	GSM878630_UW.Fetal_Heart.ChromatinAccessibility.H-24042.DS19427.sga	Fetal Heart\|DNase-seq\|rep 11	DNase-seq	GSM878630
5	GSM530661_UW.Fetal_Heart.ChromatinAccessibility.H-22727.DS12810.sga	Fetal Heart\|DNase-seq\|rep 2	DNase-seq	GSM530661
6	GSM665811_UW.Fetal_Heart.ChromatinAccessibility.H-23468.DS15839.sga	Fetal Heart\|DNase-seq\|rep 3	DNase-seq	GSM665811
7	GSM665814_UW.Fetal_Heart.ChromatinAccessibility.H-23500.DS16018.sga	Fetal Heart\|DNase-seq\|rep 4	DNase-seq	GSM665814
8	GSM665817_UW.Fetal_Heart.ChromatinAccessibility.H-23524.DS16146.sga	Fetal Heart\|DNase-seq\|rep 5	DNase-seq	GSM665817
9	GSM665824_UW.Fetal_Heart.ChromatinAccessibility.H-23589.DS16500.sga	Fetal Heart\|DNase-seq\|rep 6	DNase-seq	GSM665824
10	GSM665830_UW.Fetal_Heart.ChromatinAccessibility.H-23604.DS16582.sga	Fetal Heart\|DNase-seq\|rep 7	DNase-seq	GSM665830
11	GSM665831_UW.Fetal_Heart.ChromatinAccessibility.H-23617.DS16621.sga	Fetal Heart\|DNase-seq\|rep 8	DNase-seq	GSM665831
12	GSM774203_UW.Fetal_Heart.ChromatinAccessibility.H-23663.DS16819.sga	Fetal Heart\|DNase-seq\|rep 9	DNase-seq	GSM774203
13	GSM665809.sga	sga\|	DNase-seq	GSM665809

Technical Notes

BED files were downloaded from the FTP and converted in SGA format using bed2sga (ChIP-seq).

References

Romanoski CE, Glass CK, Stunnenberg HG, Wilson L, Almouzni G
Epigenomics: Roadmap for regulation. Nature. 2015 Feb 19;518(7539):314-6. doi: 10.1038/518314a. 25693562

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