Hematopoietic stem cells.

Description

This samples serie was produced as part of the RoadMap Project.

Source

Files downloaded from GEO FTP server: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/roadmapepigenomics/by_sample/
Input file format: BED

Samples

From H. sapiens (Feb 2009 GRCh37/hg19).

ChIP-seq data:

	Filename	Description	Feature	GEO-ID
1	GSM537656_BI.CD34_Cultured_Cells.H3K27me3.cultured_CD34_2_20_09.sga	CD34 Cultured Cells\|H3K27me3	H3K27me3	GSM537656
2	GSM537655_BI.CD34_Cultured_Cells.H3K36me3.cultured_CD34_2_20_09.sga	CD34 Cultured Cells\|H3K36me3\|rep 1	H3K36me3	GSM537655
3	GSM669955_BI.CD34_Cultured_Cells.H3K36me3.123.sga	CD34 Cultured Cells\|H3K36me3\|rep 2	H3K36me3	GSM669955
4	GSM537628_BI.CD34_Cultured_Cells.H3K4me1.cultured_CD34_2_20_09.sga	CD34 Cultured Cells\|H3K4me1\|rep 1	H3K4me1	GSM537628
5	GSM669907_BI.CD34_Cultured_Cells.H3K4me1.123.sga	CD34 Cultured Cells\|H3K4me1\|rep 2	H3K4me1	GSM669907
6	GSM537629_BI.CD34_Cultured_Cells.H3K4me3.cultured_CD34_2_20_09.sga	CD34 Cultured Cells\|H3K4me3\|rep 1	H3K4me3	GSM537629
7	GSM669943_BI.CD34_Cultured_Cells.H3K4me3.123.sga	CD34 Cultured Cells\|H3K4me3\|rep 2	H3K4me3	GSM669943
8	GSM537653_BI.CD34_Cultured_Cells.H3K9me3.cultured_CD34_2_20_09.sga	CD34 Cultured Cells\|H3K9me3\|rep 1	H3K9me3	GSM537653
9	GSM669995_BI.CD34_Cultured_Cells.H3K9me3.123.sga	CD34 Cultured Cells\|H3K9me3\|rep 2	H3K9me3	GSM669995
10	GSM669929_BI.CD34_Cultured_Cells.Input.123.sga	CD34 Cultured Cells\|Input	WCE	GSM669929
11	GSM486704_BI.CD34_Primary_Cells.H3K27me3.CD34_39661.sga	CD34 Primary Cells\|H3K27me3\|rep 1	H3K27me3	GSM486704
12	GSM486706_BI.CD34_Primary_Cells.H3K27me3.CD34_39804.sga	CD34 Primary Cells\|H3K27me3\|rep 2	H3K27me3	GSM486706
13	GSM486705_BI.CD34_Primary_Cells.H3K36me3.CD34_39661.sga	CD34 Primary Cells\|H3K36me3\|rep 1	H3K36me3	GSM486705
14	GSM486714_BI.CD34_Primary_Cells.H3K36me3.CD34_39811.sga	CD34 Primary Cells\|H3K36me3\|rep 2	H3K36me3	GSM486714
15	GSM486707_BI.CD34_Primary_Cells.H3K4me1.CD34_39889.sga	CD34 Primary Cells\|H3K4me1\|rep 1	H3K4me1	GSM486707
16	GSM486708_BI.CD34_Primary_Cells.H3K4me1.CD34_39811.sga	CD34 Primary Cells\|H3K4me1\|rep 2	H3K4me1	GSM486708
17	GSM486709_BI.CD34_Primary_Cells.H3K4me3.CD34_39629.sga	CD34 Primary Cells\|H3K4me3\|rep 1	H3K4me3	GSM486709
18	GSM486711_BI.CD34_Primary_Cells.H3K4me3.CD34_39804.sga	CD34 Primary Cells\|H3K4me3\|rep 2	H3K4me3	GSM486711
19	GSM486710_BI.CD34_Primary_Cells.H3K9me3.CD34_39889.sga	CD34 Primary Cells\|H3K9me3\|rep 1	H3K9me3	GSM486710
20	GSM486712_BI.CD34_Primary_Cells.H3K9me3.CD34_39811.sga	CD34 Primary Cells\|H3K9me3\|rep 2	H3K9me3	GSM486712
21	GSM486702_BI.CD34_Primary_Cells.Input.CD34_39661.sga	CD34 Primary Cells\|Input\|rep 1	WCE	GSM486702
22	GSM669961_BI.CD34_Primary_Cells.Input.UW_RO_01492.sga	CD34 Primary Cells\|Input\|rep 2	WCE	GSM669961

Technical Notes

BED files were downloaded from the FTP and converted in SGA format using bed2sga (ChIP-seq).

References