Fetal urinary system.

Description

This samples serie was produced as part of the RoadMap Project.

Source

Files downloaded from GEO FTP server: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/roadmapepigenomics/by_sample/
Input file format: BED

Samples

From H. sapiens (Feb 2009 GRCh37/hg19).

ChIP-seq data:

Filename Description Feature GEO-ID
1 GSM621424_BI.Fetal_Kidney.H3K27me3.UW_H-22676.sga Fetal Kidney|H3K27me3 H3K27me3 GSM621424
2 GSM621415_BI.Fetal_Kidney.H3K36me3.UW_H-22676.sga Fetal Kidney|H3K36me3 H3K36me3 GSM621415
3 GSM621409_BI.Fetal_Kidney.H3K4me1.UW_H-22676.sga Fetal Kidney|H3K4me1 H3K4me1 GSM621409
4 GSM621438_BI.Fetal_Kidney.H3K4me3.UW_H-22676.sga Fetal Kidney|H3K4me3 H3K4me3 GSM621438
5 GSM621430_BI.Fetal_Kidney.H3K9ac.UW_H-22676.sga Fetal Kidney|H3K9ac H3K9ac GSM621430
6 GSM621441_BI.Fetal_Kidney.H3K9me3.UW_H-22676.sga Fetal Kidney|H3K9me3 H3K9me3 GSM621441
7 GSM772733_BI.Fetal_Kidney.Input.UW_H23435.sga Fetal Kidney|Input WCE GSM772733

DNase FAIRE data:

Filename Description Feature GEO-ID
1 GSM1027336_UW.Fetal_Kidney_Left.ChromatinAccessibility.H-24568.DNase.DS20920.sga Fetal Kidney Left|DNase-seq|rep 1 DNase-seq GSM1027336
2 GSM1027338_UW.Fetal_Kidney_Left.ChromatinAccessibility.H-24582.DNase.DS20953.sga Fetal Kidney Left|DNase-seq|rep 2 DNase-seq GSM1027338
3 GSM1027347_UW.Fetal_Kidney_Left.ChromatinAccessibility.H-24626.DNase.DS21344.sga Fetal Kidney Left|DNase-seq|rep 3 DNase-seq GSM1027347
4 GSM665822_UW.Fetal_Kidney_Left.ChromatinAccessibility.H-23589.DS16446.sga Fetal Kidney Left|DNase-seq|rep 4 DNase-seq GSM665822
5 GSM665829_UW.Fetal_Kidney_Left.ChromatinAccessibility.H-23604.DS16579.sga Fetal Kidney Left|DNase-seq|rep 5 DNase-seq GSM665829
6 GSM665834_UW.Fetal_Kidney_Left.ChromatinAccessibility.H-23640.DS16805.sga Fetal Kidney Left|DNase-seq|rep 6 DNase-seq GSM665834
7 GSM774209_UW.Fetal_Kidney_Left.ChromatinAccessibility.H-23758.DS17140.sga Fetal Kidney Left|DNase-seq|rep 7 DNase-seq GSM774209
8 GSM817181_UW.Fetal_Kidney_Left.ChromatinAccessibility.H-24089.DS18466.sga Fetal Kidney Left|DNase-seq|rep 8 DNase-seq GSM817181
9 GSM1024607_UW.Fetal_Kidney_Right.ChromatinAccessibility.H-24568.DS20917.sga Fetal Kidney Right|DNase-seq|rep 1 DNase-seq GSM1024607
10 GSM1027337_UW.Fetal_Kidney_Right.ChromatinAccessibility.H-24582.DNase.DS20951.sga Fetal Kidney Right|DNase-seq|rep 2 DNase-seq GSM1027337
11 GSM1027340_UW.Fetal_Kidney_Right.ChromatinAccessibility.H-24595.DNase.DS21044.sga Fetal Kidney Right|DNase-seq|rep 3 DNase-seq GSM1027340
12 GSM1027346_UW.Fetal_Kidney_Right.ChromatinAccessibility.H-24626.DNase.DS21340.sga Fetal Kidney Right|DNase-seq|rep 4 DNase-seq GSM1027346
13 GSM665810_UW.Fetal_Kidney_Right.ChromatinAccessibility.H-23435.DS15651.sga Fetal Kidney Right|DNase-seq|rep 5 DNase-seq GSM665810
14 GSM665821_UW.Fetal_Kidney_Right.ChromatinAccessibility.H-23589.DS16441.sga Fetal Kidney Right|DNase-seq|rep 6 DNase-seq GSM665821
15 GSM665833_UW.Fetal_Kidney_Right.ChromatinAccessibility.H-23640.DS16801.sga Fetal Kidney Right|DNase-seq|rep 7 DNase-seq GSM665833
16 GSM817163_UW.Fetal_Kidney_Right.ChromatinAccessibility.H-23758.DS17144.sga Fetal Kidney Right|DNase-seq|rep 8 DNase-seq GSM817163
17 GSM817180_UW.Fetal_Kidney_Right.ChromatinAccessibility.H-24089.DS18463.sga Fetal Kidney Right|DNase-seq|rep 9 DNase-seq GSM817180
18 GSM1024608_UW.Fetal_Kidney.ChromatinAccessibility.H-24584.DS20987.sga Fetal Kidney|DNase-seq|rep 1 DNase-seq GSM1024608
19 GSM878666_UW.Fetal_Kidney.ChromatinAccessibility.H-24507.DS20564.sga Fetal Kidney|DNase-seq|rep 10 DNase-seq GSM878666
20 GSM1027329_UW.Fetal_Kidney.ChromatinAccessibility.H-24510.DNase.DS20786.sga Fetal Kidney|DNase-seq|rep 2 DNase-seq GSM1027329
21 GSM1027342_UW.Fetal_Kidney.ChromatinAccessibility.H-24608.DNase.DS21096.sga Fetal Kidney|DNase-seq|rep 3 DNase-seq GSM1027342
22 GSM493385_UW.Fetal_Kidney.ChromatinAccessibility.H-22337.DS10986.sga Fetal Kidney|DNase-seq|rep 4 DNase-seq GSM493385
23 GSM530655_UW.Fetal_Kidney.ChromatinAccessibility.H-22676.DS12635.sga Fetal Kidney|DNase-seq|rep 5 DNase-seq GSM530655
24 GSM665816_UW.Fetal_Kidney.ChromatinAccessibility.H-23524.DS16139.sga Fetal Kidney|DNase-seq|rep 6 DNase-seq GSM665816
25 GSM701515_UW.Fetal_Kidney.ChromatinAccessibility.H-23855.DS17522.sga Fetal Kidney|DNase-seq|rep 7 DNase-seq GSM701515
26 GSM774221_UW.Fetal_Kidney.ChromatinAccessibility.H-23887.DS17753.sga Fetal Kidney|DNase-seq|rep 8 DNase-seq GSM774221
27 GSM817159_UW.Fetal_Kidney.ChromatinAccessibility.H-23663.DS16837.sga Fetal Kidney|DNase-seq|rep 9 DNase-seq GSM817159
28 GSM701519_UW.Fetal_Renal_Cortex_Left.ChromatinAccessibility.H-23871.DS17550.sga Fetal Renal Cortex Left|DNase-seq|rep 1 DNase-seq GSM701519
29 GSM817190_UW.Fetal_Renal_Cortex_Left.ChromatinAccessibility.H-24111.DS18542.sga Fetal Renal Cortex Left|DNase-seq|rep 2 DNase-seq GSM817190
30 GSM817203_UW.Fetal_Renal_Cortex_Left.ChromatinAccessibility.H-24169.DS18931.sga Fetal Renal Cortex Left|DNase-seq|rep 3 DNase-seq GSM817203
31 GSM817211_UW.Fetal_Renal_Cortex_Left.ChromatinAccessibility.H-24232.DS19257.sga Fetal Renal Cortex Left|DNase-seq|rep 4 DNase-seq GSM817211
32 GSM701517_UW.Fetal_Renal_Cortex_Right.ChromatinAccessibility.H-23871.DS17545.sga Fetal Renal Cortex Right|DNase-seq|rep 1 DNase-seq GSM701517
33 GSM817202_UW.Fetal_Renal_Cortex_Right.ChromatinAccessibility.H-24169.DS18928.sga Fetal Renal Cortex Right|DNase-seq|rep 2 DNase-seq GSM817202
34 GSM817210_UW.Fetal_Renal_Cortex_Right.ChromatinAccessibility.H-24232.DS19254.sga Fetal Renal Cortex Right|DNase-seq|rep 3 DNase-seq GSM817210
35 GSM1027314_UW.Fetal_Renal_Cortex.ChromatinAccessibility.H-24342.DNase.DS20018.sga Fetal Renal Cortex|DNase-seq|rep 1 DNase-seq GSM1027314
36 GSM878629_UW.Fetal_Renal_Cortex.ChromatinAccessibility.H-24259.DS19388.sga Fetal Renal Cortex|DNase-seq|rep 10 DNase-seq GSM878629
37 GSM878667_UW.Fetal_Renal_Cortex.ChromatinAccessibility.H-24493.DS20568.sga Fetal Renal Cortex|DNase-seq|rep 11 DNase-seq GSM878667
38 GSM1027316_UW.Fetal_Renal_Cortex.ChromatinAccessibility.H-24365.DNase.DS20024.sga Fetal Renal Cortex|DNase-seq|rep 2 DNase-seq GSM1027316
39 GSM1027323_UW.Fetal_Renal_Cortex.ChromatinAccessibility.H-24477.DNase.DS20445.sga Fetal Renal Cortex|DNase-seq|rep 3 DNase-seq GSM1027323
40 GSM701494_UW.Fetal_Renal_Cortex.ChromatinAccessibility.H-23769.DS17307.sga Fetal Renal Cortex|DNase-seq|rep 4 DNase-seq GSM701494
41 GSM701502_UW.Fetal_Renal_Cortex.ChromatinAccessibility.H-23790.DS17387.sga Fetal Renal Cortex|DNase-seq|rep 5 DNase-seq GSM701502
42 GSM701511_UW.Fetal_Renal_Cortex.ChromatinAccessibility.H-23833.DS17455.sga Fetal Renal Cortex|DNase-seq|rep 6 DNase-seq GSM701511
43 GSM701529_UW.Fetal_Renal_Cortex.ChromatinAccessibility.H-23914.DS17756.sga Fetal Renal Cortex|DNase-seq|rep 7 DNase-seq GSM701529
44 GSM701532_UW.Fetal_Renal_Cortex.ChromatinAccessibility.H-23941.DS17804.sga Fetal Renal Cortex|DNase-seq|rep 8 DNase-seq GSM701532
45 GSM817176_UW.Fetal_Renal_Cortex.ChromatinAccessibility.H-24078.DS18428.sga Fetal Renal Cortex|DNase-seq|rep 9 DNase-seq GSM817176
46 GSM701520_UW.Fetal_Renal_Pelvis_Left.ChromatinAccessibility.H-23871.DS17553.sga Fetal Renal Pelvis Left|DNase-seq|rep 1 DNase-seq GSM701520
47 GSM817193_UW.Fetal_Renal_Pelvis_Left.ChromatinAccessibility.H-24111.DS18666.sga Fetal Renal Pelvis Left|DNase-seq|rep 2 DNase-seq GSM817193
48 GSM817205_UW.Fetal_Renal_Pelvis_Left.ChromatinAccessibility.H-24169.DS18964.sga Fetal Renal Pelvis Left|DNase-seq|rep 3 DNase-seq GSM817205
49 GSM817209_UW.Fetal_Renal_Pelvis_Left.ChromatinAccessibility.H-24232.DS19238.sga Fetal Renal Pelvis Left|DNase-seq|rep 4 DNase-seq GSM817209
50 GSM701518_UW.Fetal_Renal_Pelvis_Right.ChromatinAccessibility.H-23871.DS17548.sga Fetal Renal Pelvis Right|DNase-seq|rep 1 DNase-seq GSM701518
51 GSM817192_UW.Fetal_Renal_Pelvis_Right.ChromatinAccessibility.H-24111.DS18663.sga Fetal Renal Pelvis Right|DNase-seq|rep 2 DNase-seq GSM817192
52 GSM817204_UW.Fetal_Renal_Pelvis_Right.ChromatinAccessibility.H-24169.DS18961.sga Fetal Renal Pelvis Right|DNase-seq|rep 3 DNase-seq GSM817204
53 GSM817208_UW.Fetal_Renal_Pelvis_Right.ChromatinAccessibility.H-24232.DS19235.sga Fetal Renal Pelvis Right|DNase-seq|rep 4 DNase-seq GSM817208
54 GSM1027315_UW.Fetal_Renal_Pelvis.ChromatinAccessibility.H-24342.DNase.DS20022.sga Fetal Renal Pelvis|DNase-seq|rep 1 DNase-seq GSM1027315
55 GSM878662_UW.Fetal_Renal_Pelvis.ChromatinAccessibility.H-24477.DS20448.sga Fetal Renal Pelvis|DNase-seq|rep 10 DNase-seq GSM878662
56 GSM1027317_UW.Fetal_Renal_Pelvis.ChromatinAccessibility.H-24365.DNase.DS20027.sga Fetal Renal Pelvis|DNase-seq|rep 2 DNase-seq GSM1027317
57 GSM1027324_UW.Fetal_Renal_Pelvis.ChromatinAccessibility.H-24493.DNase.DS20570.sga Fetal Renal Pelvis|DNase-seq|rep 3 DNase-seq GSM1027324
58 GSM701501_UW.Fetal_Renal_Pelvis.ChromatinAccessibility.H-23790.DS17381.sga Fetal Renal Pelvis|DNase-seq|rep 4 DNase-seq GSM701501
59 GSM701510_UW.Fetal_Renal_Pelvis.ChromatinAccessibility.H-23833.DS17451.sga Fetal Renal Pelvis|DNase-seq|rep 5 DNase-seq GSM701510
60 GSM774222_UW.Fetal_Renal_Pelvis.ChromatinAccessibility.H-23914.DS17760.sga Fetal Renal Pelvis|DNase-seq|rep 6 DNase-seq GSM774222
61 GSM774236_UW.Fetal_Renal_Pelvis.ChromatinAccessibility.H-24005.DS18088.sga Fetal Renal Pelvis|DNase-seq|rep 7 DNase-seq GSM774236
62 GSM817177_UW.Fetal_Renal_Pelvis.ChromatinAccessibility.H-24078.DS18431.sga Fetal Renal Pelvis|DNase-seq|rep 8 DNase-seq GSM817177
63 GSM817218_UW.Fetal_Renal_Pelvis.ChromatinAccessibility.H-24259.DS19386.sga Fetal Renal Pelvis|DNase-seq|rep 9 DNase-seq GSM817218

Technical Notes

BED files were downloaded from the FTP and converted in SGA format using bed2sga (ChIP-seq).

References

Genome browser viewable files