This samples serie was produced as part of the RoadMap Project.
Files downloaded from GEO FTP server: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/roadmapepigenomics/by_sample/
Input file format: BED
From H. sapiens (Feb 2009 GRCh37/hg19).
ChIP-seq data:
Filename | Description | Feature | GEO-ID | |
1 | GSM1013123_UCSD.Lung.H3K27ac.STL001.sga | Lung|H3K27ac|rep 1 | H3K27ac | GSM1013123 |
2 | GSM906395_UCSD.Lung.H3K27ac.STL002.sga | Lung|H3K27ac|rep 2 | H3K27ac | GSM906395 |
3 | GSM1059437_UCSD.Lung.H3K36me3.STL001.sga | Lung|H3K36me3|rep 1 | H3K36me3 | GSM1059437 |
4 | GSM956014_UCSD.Lung.H3K36me3.STL002.sga | Lung|H3K36me3|rep 2 | H3K36me3 | GSM956014 |
5 | GSM1059443_UCSD.Lung.H3K4me1.STL001.sga | Lung|H3K4me1|rep 1 | H3K4me1 | GSM1059443 |
6 | GSM910572_UCSD.Lung.H3K4me1.STL002.sga | Lung|H3K4me1|rep 2 | H3K4me1 | GSM910572 |
7 | GSM915336_UCSD.Lung.H3K4me3.STL002.sga | Lung|H3K4me3 | H3K4me3 | GSM915336 |
8 | GSM1120355_UCSD.Lung.H3K9me3.STL001.sga | Lung|H3K9me3|rep 1 | H3K9me3 | GSM1120355 |
9 | GSM906411_UCSD.Lung.H3K9me3.STL002.sga | Lung|H3K9me3|rep 2 | H3K9me3 | GSM906411 |
10 | GSM1013165_UCSD.Lung.Input.STL001.sga | Lung|Input|rep 1 | Input | GSM1013165 |
11 | GSM906417_UCSD.Lung.Input.STL002.sga | Lung|Input|rep 2 | Input | GSM906417 |
12 | GSM956031_UCSD.Lung.Input.STL002.AY296.sga | Lung|Input|rep 3 | Input | GSM956031 |
BED files were downloaded from the FTP and converted in SGA format using bed2sga (ChIP-seq).