Fetal lung.

Description

This samples serie was produced as part of the RoadMap Project.

Source

Files downloaded from GEO FTP server: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/roadmapepigenomics/by_sample/
Input file format: BED

Samples

From H. sapiens (Feb 2009 GRCh37/hg19).

ChIP-seq data:

	Filename	Description	Feature	GEO-ID
1	GSM621390_BI.Fetal_Lung.H3K27me3.UW_H-22727.sga	Fetal Lung\|H3K27me3\|rep 1	H3K27me3	GSM621390
2	GSM706852_BI.Fetal_Lung.H3K27me3.UW_H22772.sga	Fetal Lung\|H3K27me3\|rep 2	H3K27me3	GSM706852
3	GSM621387_BI.Fetal_Lung.H3K36me3.UW_H-22727.sga	Fetal Lung\|H3K36me3\|rep 1	H3K36me3	GSM621387
4	GSM669912_BI.Fetal_Lung.H3K36me3.UW_H23284.sga	Fetal Lung\|H3K36me3\|rep 2	H3K36me3	GSM669912
5	GSM621429_BI.Fetal_Lung.H3K4me1.UW_H-22727.sga	Fetal Lung\|H3K4me1\|rep 1	H3K4me1	GSM621429
6	GSM669969_BI.Fetal_Lung.H3K4me1.UW_H23266.sga	Fetal Lung\|H3K4me1\|rep 2	H3K4me1	GSM669969
7	GSM706853_BI.Fetal_Lung.H3K4me1.UW_H22772.sga	Fetal Lung\|H3K4me1\|rep 3	H3K4me1	GSM706853
8	GSM621405_BI.Fetal_Lung.H3K4me3.UW_H-22676.sga	Fetal Lung\|H3K4me3\|rep 1	H3K4me3	GSM621405
9	GSM621417_BI.Fetal_Lung.H3K4me3.UW_H-22727.sga	Fetal Lung\|H3K4me3\|rep 2	H3K4me3	GSM621417
10	GSM621400_BI.Fetal_Lung.H3K9ac.UW_H-22727.sga	Fetal Lung\|H3K9ac\|rep 1	H3K9ac	GSM621400
11	GSM706854_BI.Fetal_Lung.H3K9ac.UW_H22772.sga	Fetal Lung\|H3K9ac\|rep 2	H3K9ac	GSM706854
12	GSM621397_BI.Fetal_Lung.H3K9me3.UW_H-22727.sga	Fetal Lung\|H3K9me3\|rep 1	H3K9me3	GSM621397
13	GSM669939_BI.Fetal_Lung.H3K9me3.UW_H23266.sga	Fetal Lung\|H3K9me3\|rep 2	H3K9me3	GSM669939
14	GSM669956_BI.Fetal_Lung.Input.UW_H23266.sga	Fetal Lung\|Input\|rep 1	WCE	GSM669956
15	GSM669993_BI.Fetal_Lung.Input.UW_H23284.sga	Fetal Lung\|Input\|rep 2	WCE	GSM669993
16	GSM706855_BI.Fetal_Lung.Input.UW_H22772.sga	Fetal Lung\|Input\|rep 3	WCE	GSM706855
17	GSM521866_UCSD.IMR90.H2AK5ac.YL20.sga	IMR90\|H2AK5ac\|rep 1	H2AK5ac	GSM521866
18	GSM521868_UCSD.IMR90.H2AK5ac.YL60.sga	IMR90\|H2AK5ac\|rep 2	H2AK5ac	GSM521868
19	GSM818012_UCSD.IMR90.H2AK9ac.AY6.sga	IMR90\|H2AK9ac\|rep 1	H2AK9ac	GSM818012
20	GSM818013_UCSD.IMR90.H2AK9ac.AY7.sga	IMR90\|H2AK9ac\|rep 2	H2AK9ac	GSM818013
21	GSM818007_UCSD.IMR90.H2A.Z.AY4.sga	IMR90\|H2A\|rep 1	H2A.Z	GSM818007
22	GSM818008_UCSD.IMR90.H2A.Z.AY5.sga	IMR90\|H2A\|rep 2	H2A.Z	GSM818008
23	GSM521869_UCSD.IMR90.H2BK120ac.YL06.sga	IMR90\|H2BK120ac\|rep 1	H2BK120ac	GSM521869
24	GSM521870_UCSD.IMR90.H2BK120ac.SK15.sga	IMR90\|H2BK120ac\|rep 2	H2BK120ac	GSM521870
25	GSM521871_UCSD.IMR90.H2BK12ac.YL18.sga	IMR90\|H2BK12ac\|rep 1	H2BK12ac	GSM521871
26	GSM521873_UCSD.IMR90.H2BK12ac.YL68.sga	IMR90\|H2BK12ac\|rep 2	H2BK12ac	GSM521873
27	GSM521874_UCSD.IMR90.H2BK12ac.YL138.sga	IMR90\|H2BK12ac\|rep 3	H2BK12ac	GSM521874
28	GSM521875_UCSD.IMR90.H2BK15ac.YL19.sga	IMR90\|H2BK15ac\|rep 1	H2BK15ac	GSM521875
29	GSM521877_UCSD.IMR90.H2BK15ac.YL69.sga	IMR90\|H2BK15ac\|rep 2	H2BK15ac	GSM521877
30	GSM521878_UCSD.IMR90.H2BK15ac.SK42.sga	IMR90\|H2BK15ac\|rep 3	H2BK15ac	GSM521878
31	GSM521879_UCSD.IMR90.H2BK20ac.YL07.sga	IMR90\|H2BK20ac\|rep 1	H2BK20ac	GSM521879
32	GSM521880_UCSD.IMR90.H2BK20ac.SK14.sga	IMR90\|H2BK20ac\|rep 2	H2BK20ac	GSM521880
33	GSM818017_UCSD.IMR90.H2BK5ac.YL281.sga	IMR90\|H2BK5ac\|rep 1	H2BK5ac	GSM818017
34	GSM832837_UCSD.IMR90.H2BK5ac.LL229.sga	IMR90\|H2BK5ac\|rep 2	H2BK5ac	GSM832837
35	GSM832838_UCSD.IMR90.H2BK5ac.SK10.sga	IMR90\|H2BK5ac\|rep 3	H2BK5ac	GSM832838
36	GSM521881_UCSD.IMR90.H3K14ac.YL15.sga	IMR90\|H3K14ac\|rep 1	H3K14ac	GSM521881
37	GSM521883_UCSD.IMR90.H3K14ac.SK17.sga	IMR90\|H3K14ac\|rep 2	H3K14ac	GSM521883
38	GSM469965_UCSD.IMR90.H3K18ac.LL230.sga	IMR90\|H3K18ac\|rep 1	H3K18ac	GSM469965
39	GSM521884_UCSD.IMR90.H3K18ac.SK09.sga	IMR90\|H3K18ac\|rep 2	H3K18ac	GSM521884
40	GSM521885_UCSD.IMR90.H3K23ac.YL09.sga	IMR90\|H3K23ac\|rep 1	H3K23ac	GSM521885
41	GSM521886_UCSD.IMR90.H3K23ac.SK18.sga	IMR90\|H3K23ac\|rep 2	H3K23ac	GSM521886
42	GSM469966_UCSD.IMR90.H3K27ac.LL231.sga	IMR90\|H3K27ac\|rep 1	H3K27ac	GSM469966
43	GSM469967_UCSD.IMR90.H3K27ac.LL235.sga	IMR90\|H3K27ac\|rep 2	H3K27ac	GSM469967
44	GSM521887_UCSD.IMR90.H3K27ac.YL58.sga	IMR90\|H3K27ac\|rep 3	H3K27ac	GSM521887
45	GSM469968_UCSD.IMR90.H3K27me3.LL223.sga	IMR90\|H3K27me3\|rep 1	H3K27me3	GSM469968
46	GSM521889_UCSD.IMR90.H3K27me3.SK05.sga	IMR90\|H3K27me3\|rep 2	H3K27me3	GSM521889
47	GSM521890_UCSD.IMR90.H3K36me3.LL225.sga	IMR90\|H3K36me3\|rep 1	H3K36me3	GSM521890
48	GSM521892_UCSD.IMR90.H3K36me3.YL67.sga	IMR90\|H3K36me3\|rep 2	H3K36me3	GSM521892
49	GSM521893_UCSD.IMR90.H3K4ac.LL239.sga	IMR90\|H3K4ac\|rep 1	H3K4ac	GSM521893
50	GSM521894_UCSD.IMR90.H3K4ac.SK16.sga	IMR90\|H3K4ac\|rep 2	H3K4ac	GSM521894
51	GSM521895_UCSD.IMR90.H3K4me1.LL222.sga	IMR90\|H3K4me1\|rep 1	H3K4me1	GSM521895
52	GSM521897_UCSD.IMR90.H3K4me1.SK04.sga	IMR90\|H3K4me1\|rep 2	H3K4me1	GSM521897
53	GSM521898_UCSD.IMR90.H3K4me1.SYL133.sga	IMR90\|H3K4me1\|rep 3	H3K4me1	GSM521898
54	GSM521899_UCSD.IMR90.H3K4me2.LL232.sga	IMR90\|H3K4me2\|rep 1	H3K4me2	GSM521899
55	GSM521900_UCSD.IMR90.H3K4me2.SK07.sga	IMR90\|H3K4me2\|rep 2	H3K4me2	GSM521900
56	GSM469970_UCSD.IMR90.H3K4me3.LL221.sga	IMR90\|H3K4me3\|rep 1	H3K4me3	GSM469970
57	GSM521901_UCSD.IMR90.H3K4me3.SK03.sga	IMR90\|H3K4me3\|rep 2	H3K4me3	GSM521901
58	GSM521902_UCSD.IMR90.H3K56ac.YL05.sga	IMR90\|H3K56ac\|rep 1	H3K56ac	GSM521902
59	GSM521903_UCSD.IMR90.H3K56ac.YL61.sga	IMR90\|H3K56ac\|rep 2	H3K56ac	GSM521903
60	GSM521904_UCSD.IMR90.H3K79me1.YL16.sga	IMR90\|H3K79me1\|rep 1	H3K79me1	GSM521904
61	GSM521906_UCSD.IMR90.H3K79me1.SK11.sga	IMR90\|H3K79me1\|rep 2	H3K79me1	GSM521906
62	GSM521907_UCSD.IMR90.H3K79me1.YL103.sga	IMR90\|H3K79me1\|rep 3	H3K79me1	GSM521907
63	GSM521908_UCSD.IMR90.H3K79me1.YL145.sga	IMR90\|H3K79me1\|rep 4	H3K79me1	GSM521908
64	GSM521909_UCSD.IMR90.H3K79me2.LL238.sga	IMR90\|H3K79me2\|rep 1	H3K79me2	GSM521909
65	GSM521911_UCSD.IMR90.H3K79me2.SK43.sga	IMR90\|H3K79me2\|rep 2	H3K79me2	GSM521911
66	GSM469973_UCSD.IMR90.H3K9ac.LL233.sga	IMR90\|H3K9ac\|rep 1	H3K9ac	GSM469973
67	GSM521912_UCSD.IMR90.H3K9ac.SK46.sga	IMR90\|H3K9ac\|rep 2	H3K9ac	GSM521912
68	GSM752986_UCSD.IMR90.H3K9me1.LL237.sga	IMR90\|H3K9me1\|rep 1	H3K9me1	GSM752986
69	GSM752987_UCSD.IMR90.H3K9me1.SK12.sga	IMR90\|H3K9me1\|rep 2	H3K9me1	GSM752987
70	GSM469974_UCSD.IMR90.H3K9me3.LL224.sga	IMR90\|H3K9me3\|rep 1	H3K9me3	GSM469974
71	GSM521913_UCSD.IMR90.H3K9me3.SK06.sga	IMR90\|H3K9me3\|rep 2	H3K9me3	GSM521913
72	GSM521914_UCSD.IMR90.H3K9me3.YL104.sga	IMR90\|H3K9me3\|rep 3	H3K9me3	GSM521914
73	GSM521915_UCSD.IMR90.H4K20me1.YL21.sga	IMR90\|H4K20me1\|rep 1	H4K20me1	GSM521915
74	GSM521917_UCSD.IMR90.H4K20me1.YL59.sga	IMR90\|H4K20me1\|rep 2	H4K20me1	GSM521917
75	GSM469975_UCSD.IMR90.H4K5ac.LL234.sga	IMR90\|H4K5ac\|rep 1	H4K5ac	GSM469975
76	GSM521918_UCSD.IMR90.H4K5ac.SK08.sga	IMR90\|H4K5ac\|rep 2	H4K5ac	GSM521918
77	GSM521919_UCSD.IMR90.H4K8ac.YL17.sga	IMR90\|H4K8ac\|rep 1	H4K8ac	GSM521919
78	GSM521921_UCSD.IMR90.H4K8ac.YL57.sga	IMR90\|H4K8ac\|rep 2	H4K8ac	GSM521921
79	GSM521922_UCSD.IMR90.H4K8ac.SK45.sga	IMR90\|H4K8ac\|rep 3	H4K8ac	GSM521922
80	GSM521923_UCSD.IMR90.H4K8ac.YL142.sga	IMR90\|H4K8ac\|rep 4	H4K8ac	GSM521923
81	GSM521924_UCSD.IMR90.H4K91ac.YL08.sga	IMR90\|H4K91ac\|rep 1	H4K91ac	GSM521924
82	GSM521925_UCSD.IMR90.H4K91ac.SK49.sga	IMR90\|H4K91ac\|rep 2	H4K91ac	GSM521925
83	GSM521926_UCSD.IMR90.Input.LL-I1.sga	IMR90\|Input\|rep 1	Input	GSM521926
84	GSM521927_UCSD.IMR90.Input.LL-I2.sga	IMR90\|Input\|rep 2	Input	GSM521927
85	GSM521928_UCSD.IMR90.Input.SK-I1.sga	IMR90\|Input\|rep 3	Input	GSM521928
86	GSM521929_UCSD.IMR90.Input.SK-I2.sga	IMR90\|Input\|rep 4	Input	GSM521929
87	GSM521930_UCSD.IMR90.Input.IMR90-05-I1.sga	IMR90\|Input\|rep 5	Input	GSM521930
88	GSM521931_UCSD.IMR90.Input.IMR90-06-I1.sga	IMR90\|Input\|rep 6	Input	GSM521931
89	GSM521932_UCSD.IMR90.Input.IMR90-07-I1.sga	IMR90\|Input\|rep 7	Input	GSM521932
90	GSM521933_UCSD.IMR90.Input.SK-I3.sga	IMR90\|Input\|rep 8	Input	GSM521933
91	GSM959044_UCSD.IMR90.Input.AK106.sga	IMR90\|Input\|rep 9	Input	GSM959044

DNase FAIRE data:

	Filename	Description	Feature	GEO-ID
1	GSM1027345_UW.Fetal_Lung_Left.ChromatinAccessibility.H-24626.DNase.DS21334.sga	Fetal Lung Left\|DNase-seq\|rep 1	DNase-seq	GSM1027345
2	GSM774237_UW.Fetal_Lung_Left.ChromatinAccessibility.H-23640.DS18170.sga	Fetal Lung Left\|DNase-seq\|rep 10	DNase-seq	GSM774237
3	GSM817168_UW.Fetal_Lung_Left.ChromatinAccessibility.H-24005.DS17959.sga	Fetal Lung Left\|DNase-seq\|rep 11	DNase-seq	GSM817168
4	GSM817175_UW.Fetal_Lung_Left.ChromatinAccessibility.H-24089.DS18421.sga	Fetal Lung Left\|DNase-seq\|rep 12	DNase-seq	GSM817175
5	GSM817185_UW.Fetal_Lung_Left.ChromatinAccessibility.H-24111.DS18487.sga	Fetal Lung Left\|DNase-seq\|rep 13	DNase-seq	GSM817185
6	GSM665808_UW.Fetal_Lung_Left.ChromatinAccessibility.H-23435.DS15637.sga	Fetal Lung Left\|DNase-seq\|rep 2	DNase-seq	GSM665808
7	GSM665828_UW.Fetal_Lung_Left.ChromatinAccessibility.H-23604.DS16570.sga	Fetal Lung Left\|DNase-seq\|rep 3	DNase-seq	GSM665828
8	GSM701512_UW.Fetal_Lung_Left.ChromatinAccessibility.H-23833.DS17464.sga	Fetal Lung Left\|DNase-seq\|rep 4	DNase-seq	GSM701512
9	GSM701524_UW.Fetal_Lung_Left.ChromatinAccessibility.H-23887.DS17674.sga	Fetal Lung Left\|DNase-seq\|rep 5	DNase-seq	GSM701524
10	GSM701527_UW.Fetal_Lung_Left.ChromatinAccessibility.H-23914.DS17739.sga	Fetal Lung Left\|DNase-seq\|rep 6	DNase-seq	GSM701527
11	GSM701534_UW.Fetal_Lung_Left.ChromatinAccessibility.H-23964.DS17835.sga	Fetal Lung Left\|DNase-seq\|rep 7	DNase-seq	GSM701534
12	GSM774207_UW.Fetal_Lung_Left.ChromatinAccessibility.H-23744.DS17105.sga	Fetal Lung Left\|DNase-seq\|rep 8	DNase-seq	GSM774207
13	GSM774211_UW.Fetal_Lung_Left.ChromatinAccessibility.H-23758.DS17154.sga	Fetal Lung Left\|DNase-seq\|rep 9	DNase-seq	GSM774211
14	GSM1027344_UW.Fetal_Lung_Right.ChromatinAccessibility.H-24626.DNase.DS21328.sga	Fetal Lung Right\|DNase-seq\|rep 1	DNase-seq	GSM1027344
15	GSM817174_UW.Fetal_Lung_Right.ChromatinAccessibility.H-24089.DS18418.sga	Fetal Lung Right\|DNase-seq\|rep 10	DNase-seq	GSM817174
16	GSM817186_UW.Fetal_Lung_Right.ChromatinAccessibility.H-24111.DS18492.sga	Fetal Lung Right\|DNase-seq\|rep 11	DNase-seq	GSM817186
17	GSM665807_UW.Fetal_Lung_Right.ChromatinAccessibility.H-23435.DS15632.sga	Fetal Lung Right\|DNase-seq\|rep 2	DNase-seq	GSM665807
18	GSM665827_UW.Fetal_Lung_Right.ChromatinAccessibility.H-23604.DS16566.sga	Fetal Lung Right\|DNase-seq\|rep 3	DNase-seq	GSM665827
19	GSM665832_UW.Fetal_Lung_Right.ChromatinAccessibility.H-23640.DS16790.sga	Fetal Lung Right\|DNase-seq\|rep 4	DNase-seq	GSM665832
20	GSM701523_UW.Fetal_Lung_Right.ChromatinAccessibility.H-23887.DS17670.sga	Fetal Lung Right\|DNase-seq\|rep 5	DNase-seq	GSM701523
21	GSM774206_UW.Fetal_Lung_Right.ChromatinAccessibility.H-23744.DS17101.sga	Fetal Lung Right\|DNase-seq\|rep 6	DNase-seq	GSM774206
22	GSM774227_UW.Fetal_Lung_Right.ChromatinAccessibility.H-23964.DS17831.sga	Fetal Lung Right\|DNase-seq\|rep 7	DNase-seq	GSM774227
23	GSM774231_UW.Fetal_Lung_Right.ChromatinAccessibility.H-24005.DS17954.sga	Fetal Lung Right\|DNase-seq\|rep 8	DNase-seq	GSM774231
24	GSM817164_UW.Fetal_Lung_Right.ChromatinAccessibility.H-23758.DS17162.sga	Fetal Lung Right\|DNase-seq\|rep 9	DNase-seq	GSM817164
25	GSM723025_UW.Fetal_Lung.Digital_Genomic_Footprinting.H-23266.DGF.DS14724.sga	Fetal Lung\|DNase-HS	DNase-HS	GSM723025
26	GSM530656_UW.Fetal_Lung.ChromatinAccessibility.H-22676.DS12646.sga	Fetal Lung\|DNase-seq\|rep 1	DNase-seq	GSM530656
27	GSM595930_UW.Fetal_Lung.ChromatinAccessibility.H-23365.DS15227.sga	Fetal Lung\|DNase-seq\|rep 10	DNase-seq	GSM595930
28	GSM665805_UW.Fetal_Lung.ChromatinAccessibility.H-23399.DS15461.sga	Fetal Lung\|DNase-seq\|rep 11	DNase-seq	GSM665805
29	GSM665806_UW.Fetal_Lung.ChromatinAccessibility.H-23419.DS15573.sga	Fetal Lung\|DNase-seq\|rep 12	DNase-seq	GSM665806
30	GSM530662_UW.Fetal_Lung.ChromatinAccessibility.H-22727.DS12817.sga	Fetal Lung\|DNase-seq\|rep 2	DNase-seq	GSM530662
31	GSM595915_UW.Fetal_Lung.ChromatinAccessibility.H-22934B.DS13507.sga	Fetal Lung\|DNase-seq\|rep 3	DNase-seq	GSM595915
32	GSM595916_UW.Fetal_Lung.ChromatinAccessibility.H-23090.DS13985.sga	Fetal Lung\|DNase-seq\|rep 4	DNase-seq	GSM595916
33	GSM595921_UW.Fetal_Lung.ChromatinAccessibility.H-23247.DS14666.sga	Fetal Lung\|DNase-seq\|rep 5	DNase-seq	GSM595921
34	GSM595924_UW.Fetal_Lung.ChromatinAccessibility.H-23266.DS14724.sga	Fetal Lung\|DNase-seq\|rep 6	DNase-seq	GSM595924
35	GSM595925_UW.Fetal_Lung.ChromatinAccessibility.H-23266.DS14751.sga	Fetal Lung\|DNase-seq\|rep 7	DNase-seq	GSM595925
36	GSM595927_UW.Fetal_Lung.ChromatinAccessibility.H-23284.DS14809.sga	Fetal Lung\|DNase-seq\|rep 8	DNase-seq	GSM595927
37	GSM595929_UW.Fetal_Lung.ChromatinAccessibility.H-23284.DS14820.sga	Fetal Lung\|DNase-seq\|rep 9	DNase-seq	GSM595929
38	GSM723024_UW.IMR90.Digital_Genomic_Footprinting.DGF.DS13219.sga	IMR90\|DNase-HS	DNase-HS	GSM723024
39	GSM468792_UW.IMR90.ChromatinAccessibility.DS11759.sga	IMR90\|DNase-seq\|rep 1	DNase-seq	GSM468792
40	GSM468801_UW.IMR90.ChromatinAccessibility.DS11764.sga	IMR90\|DNase-seq\|rep 2	DNase-seq	GSM468801
41	GSM530665_UW.IMR90.ChromatinAccessibility.DS13219.sga	IMR90\|DNase-seq\|rep 3	DNase-seq	GSM530665
42	GSM530666_UW.IMR90.ChromatinAccessibility.DS13229.sga	IMR90\|DNase-seq\|rep 4	DNase-seq	GSM530666

Technical Notes

BED files were downloaded from the FTP and converted in SGA format using bed2sga (ChIP-seq).

References