Adult muscle.

Description

This samples serie was produced as part of the RoadMap Project.

Source

Files downloaded from GEO FTP server: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/roadmapepigenomics/by_sample/
Input file format: BED

Samples

From H. sapiens (Feb 2009 GRCh37/hg19).

ChIP-seq data:

	Filename	Description	Feature	GEO-ID
1	GSM621740_BI.Muscle_Satellite_Cultured_Cells.H3K27me3.hSKM-1.sga	Muscle Satellite Cultured Cells\|H3K27me3\|rep 1	H3K27me3	GSM621740
2	GSM621751_BI.Muscle_Satellite_Cultured_Cells.H3K27me3.hSKM-2.sga	Muscle Satellite Cultured Cells\|H3K27me3\|rep 2	H3K27me3	GSM621751
3	GSM621755_BI.Muscle_Satellite_Cultured_Cells.H3K27me3.hSKM-3.sga	Muscle Satellite Cultured Cells\|H3K27me3\|rep 3	H3K27me3	GSM621755
4	GSM621739_BI.Muscle_Satellite_Cultured_Cells.H3K36me3.hSKM-1.sga	Muscle Satellite Cultured Cells\|H3K36me3\|rep 1	H3K36me3	GSM621739
5	GSM621749_BI.Muscle_Satellite_Cultured_Cells.H3K36me3.hSKM-2.sga	Muscle Satellite Cultured Cells\|H3K36me3\|rep 2	H3K36me3	GSM621749
6	GSM621754_BI.Muscle_Satellite_Cultured_Cells.H3K36me3.hSKM-3.sga	Muscle Satellite Cultured Cells\|H3K36me3\|rep 3	H3K36me3	GSM621754
7	GSM621741_BI.Muscle_Satellite_Cultured_Cells.H3K4me1.hSKM-1.sga	Muscle Satellite Cultured Cells\|H3K4me1\|rep 1	H3K4me1	GSM621741
8	GSM621752_BI.Muscle_Satellite_Cultured_Cells.H3K4me1.hSKM-2.sga	Muscle Satellite Cultured Cells\|H3K4me1\|rep 2	H3K4me1	GSM621752
9	GSM621759_BI.Muscle_Satellite_Cultured_Cells.H3K4me1.hSKM-3.sga	Muscle Satellite Cultured Cells\|H3K4me1\|rep 3	H3K4me1	GSM621759
10	GSM621742_BI.Muscle_Satellite_Cultured_Cells.H3K4me2.hSKM-1.sga	Muscle Satellite Cultured Cells\|H3K4me2\|rep 1	H3K4me2	GSM621742
11	GSM621750_BI.Muscle_Satellite_Cultured_Cells.H3K4me2.hSKM-2.sga	Muscle Satellite Cultured Cells\|H3K4me2\|rep 2	H3K4me2	GSM621750
12	GSM621758_BI.Muscle_Satellite_Cultured_Cells.H3K4me2.hSKM-3.sga	Muscle Satellite Cultured Cells\|H3K4me2\|rep 3	H3K4me2	GSM621758
13	GSM621737_BI.Muscle_Satellite_Cultured_Cells.H3K4me3.hSKM-1.sga	Muscle Satellite Cultured Cells\|H3K4me3\|rep 1	H3K4me3	GSM621737
14	GSM621745_BI.Muscle_Satellite_Cultured_Cells.H3K4me3.hSKM-2.sga	Muscle Satellite Cultured Cells\|H3K4me3\|rep 2	H3K4me3	GSM621745
15	GSM621760_BI.Muscle_Satellite_Cultured_Cells.H3K4me3.hSKM-3.sga	Muscle Satellite Cultured Cells\|H3K4me3\|rep 3	H3K4me3	GSM621760
16	GSM621738_BI.Muscle_Satellite_Cultured_Cells.H3K9ac.hSKM-1.sga	Muscle Satellite Cultured Cells\|H3K9ac\|rep 1	H3K9ac	GSM621738
17	GSM621748_BI.Muscle_Satellite_Cultured_Cells.H3K9ac.hSKM-2.sga	Muscle Satellite Cultured Cells\|H3K9ac\|rep 2	H3K9ac	GSM621748
18	GSM621757_BI.Muscle_Satellite_Cultured_Cells.H3K9ac.hSKM-3.sga	Muscle Satellite Cultured Cells\|H3K9ac\|rep 3	H3K9ac	GSM621757
19	GSM621744_BI.Muscle_Satellite_Cultured_Cells.H3K9me3.hSKM-1.sga	Muscle Satellite Cultured Cells\|H3K9me3\|rep 1	H3K9me3	GSM621744
20	GSM621747_BI.Muscle_Satellite_Cultured_Cells.H3K9me3.hSKM-2.sga	Muscle Satellite Cultured Cells\|H3K9me3\|rep 2	H3K9me3	GSM621747
21	GSM621753_BI.Muscle_Satellite_Cultured_Cells.H3K9me3.hSKM-3.sga	Muscle Satellite Cultured Cells\|H3K9me3\|rep 3	H3K9me3	GSM621753
22	GSM621743_BI.Muscle_Satellite_Cultured_Cells.Input.hSKM-1.sga	Muscle Satellite Cultured Cells\|Input\|rep 1	Input	GSM621743
23	GSM621746_BI.Muscle_Satellite_Cultured_Cells.Input.hSKM-2.sga	Muscle Satellite Cultured Cells\|Input\|rep 2	Input	GSM621746
24	GSM621756_BI.Muscle_Satellite_Cultured_Cells.Input.hSKM-3.sga	Muscle Satellite Cultured Cells\|Input\|rep 3	Input	GSM621756
25	GSM1013130_UCSD.Psoas_Muscle.H3K27ac.STL002.sga	Psoas Muscle\|H3K27ac\|rep 1	H3K27ac	GSM1013130
26	GSM1127171_UCSD.Psoas_Muscle.H3K27ac.STL001.sga	Psoas Muscle\|H3K27ac\|rep 2	H3K27ac	GSM1127171
27	GSM910556_UCSD.Psoas_Muscle.H3K27ac.STL003.sga	Psoas Muscle\|H3K27ac\|rep 3	H3K27ac	GSM910556
28	GSM908953_UCSD.Psoas_Muscle.H3K27me3.STL003.sga	Psoas Muscle\|H3K27me3	H3K27me3	GSM908953
29	GSM1127181_UCSD.Psoas_Muscle.H3K36me3.STL001.sga	Psoas Muscle\|H3K36me3	H3K36me3	GSM1127181
30	GSM1059444_UCSD.Psoas_Muscle.H3K4me1.STL001.sga	Psoas Muscle\|H3K4me1\|rep 1	H3K4me1	GSM1059444
31	GSM956021_UCSD.Psoas_Muscle.H3K4me1.STL003.sga	Psoas Muscle\|H3K4me1\|rep 2	H3K4me1	GSM956021
32	GSM1120356_UCSD.Psoas_Muscle.H3K9me3.STL001.sga	Psoas Muscle\|H3K9me3	H3K9me3	GSM1120356
33	GSM1013166_UCSD.Psoas_Muscle.Input.STL001.sga	Psoas Muscle\|Input\|rep 1	Input	GSM1013166
34	GSM1013173_UCSD.Psoas_Muscle.Input.STL002.sga	Psoas Muscle\|Input\|rep 2	Input	GSM1013173
35	GSM906420_UCSD.Psoas_Muscle.Input.STL003.sga	Psoas Muscle\|Input\|rep 3	Input	GSM906420
36	GSM916064_BI.Skeletal_Muscle.H3K27ac.62.sga	Skeletal Muscle\|H3K27ac	H3K27ac	GSM916064
37	GSM621653_BI.Skeletal_Muscle.H3K27me3.19.sga	Skeletal Muscle\|H3K27me3\|rep 1	H3K27me3	GSM621653
38	GSM621683_BI.Skeletal_Muscle.H3K27me3.62.sga	Skeletal Muscle\|H3K27me3\|rep 2	H3K27me3	GSM621683
39	GSM621692_BI.Skeletal_Muscle.H3K27me3.63.sga	Skeletal Muscle\|H3K27me3\|rep 3	H3K27me3	GSM621692
40	GSM621644_BI.Skeletal_Muscle.H3K36me3.19.sga	Skeletal Muscle\|H3K36me3\|rep 1	H3K36me3	GSM621644
41	GSM621684_BI.Skeletal_Muscle.H3K36me3.62.sga	Skeletal Muscle\|H3K36me3\|rep 2	H3K36me3	GSM621684
42	GSM621693_BI.Skeletal_Muscle.H3K36me3.63.sga	Skeletal Muscle\|H3K36me3\|rep 3	H3K36me3	GSM621693
43	GSM621640_BI.Skeletal_Muscle.H3K4me1.19.sga	Skeletal Muscle\|H3K4me1\|rep 1	H3K4me1	GSM621640
44	GSM621679_BI.Skeletal_Muscle.H3K4me1.63.sga	Skeletal Muscle\|H3K4me1\|rep 2	H3K4me1	GSM621679
45	GSM621686_BI.Skeletal_Muscle.H3K4me1.62.sga	Skeletal Muscle\|H3K4me1\|rep 3	H3K4me1	GSM621686
46	GSM621637_BI.Skeletal_Muscle.H3K4me3.19.sga	Skeletal Muscle\|H3K4me3\|rep 1	H3K4me3	GSM621637
47	GSM621685_BI.Skeletal_Muscle.H3K4me3.62.sga	Skeletal Muscle\|H3K4me3\|rep 2	H3K4me3	GSM621685
48	GSM621694_BI.Skeletal_Muscle.H3K4me3.63.sga	Skeletal Muscle\|H3K4me3\|rep 3	H3K4me3	GSM621694
49	GSM621682_BI.Skeletal_Muscle.H3K9ac.62.sga	Skeletal Muscle\|H3K9ac\|rep 1	H3K9ac	GSM621682
50	GSM621688_BI.Skeletal_Muscle.H3K9ac.19.sga	Skeletal Muscle\|H3K9ac\|rep 2	H3K9ac	GSM621688
51	GSM621691_BI.Skeletal_Muscle.H3K9ac.63.sga	Skeletal Muscle\|H3K9ac\|rep 3	H3K9ac	GSM621691
52	GSM621632_BI.Skeletal_Muscle.H3K9me3.19.sga	Skeletal Muscle\|H3K9me3\|rep 1	H3K9me3	GSM621632
53	GSM621681_BI.Skeletal_Muscle.H3K9me3.62.sga	Skeletal Muscle\|H3K9me3\|rep 2	H3K9me3	GSM621681
54	GSM621690_BI.Skeletal_Muscle.H3K9me3.63.sga	Skeletal Muscle\|H3K9me3\|rep 3	H3K9me3	GSM621690
55	GSM621641_BI.Skeletal_Muscle.Input.19.sga	Skeletal Muscle\|Input\|rep 1	WCE	GSM621641
56	GSM621680_BI.Skeletal_Muscle.Input.62.sga	Skeletal Muscle\|Input\|rep 2	WCE	GSM621680
57	GSM669948_BI.Skeletal_Muscle.Input.63.sga	Skeletal Muscle\|Input\|rep 3	WCE	GSM669948

DNase FAIRE data:

	Filename	Description	Feature	GEO-ID
1	GSM1027321_UW.Psoas_Muscle.ChromatinAccessibility.STL001.DNase.DS20325.sga	Psoas Muscle\|DNase-seq	DNase-seq	GSM1027321

Technical Notes

BED files were downloaded from the FTP and converted in SGA format using bed2sga (ChIP-seq).

References