Fetal muscle.

Description

This samples serie was produced as part of the RoadMap Project.

Source

Files downloaded from GEO FTP server: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/roadmapepigenomics/by_sample/
Input file format: BED

Samples

From H. sapiens (Feb 2009 GRCh37/hg19).

ChIP-seq data:

Filename Description Feature GEO-ID
1 GSM1058767_UW.Fetal_Muscle_Leg.H3K27ac.H-24644.Histone.DS21782.sga Fetal Muscle Leg|H3K27ac H3K27ac GSM1058767
2 GSM1058770_UW.Fetal_Muscle_Leg.H3K27me3.H-24644.Histone.DS22559.sga Fetal Muscle Leg|H3K27me3 H3K27me3 GSM1058770
3 GSM1058773_UW.Fetal_Muscle_Leg.H3K36me3.H-24644.Histone.DS22560.sga Fetal Muscle Leg|H3K36me3 H3K36me3 GSM1058773
4 GSM1058777_UW.Fetal_Muscle_Leg.H3K4me1.H-24644.Histone.DS22558.sga Fetal Muscle Leg|H3K4me1 H3K4me1 GSM1058777
5 GSM1058781_UW.Fetal_Muscle_Leg.H3K4me3.H-24644.Histone.DS21536.sga Fetal Muscle Leg|H3K4me3 H3K4me3 GSM1058781
6 GSM1058785_UW.Fetal_Muscle_Leg.H3K9me3.H-24644.Histone.DS22903.sga Fetal Muscle Leg|H3K9me3|rep 1 H3K9me3 GSM1058785
7 GSM1160202_UW.Fetal_Muscle_Leg.H3K9me3.H-24644.Histone.DS23305.sga Fetal Muscle Leg|H3K9me3|rep 2 H3K9me3 GSM1160202
8 GSM1058788_UW.Fetal_Muscle_Leg.Input.H-24644.Histone.DS21509.sga Fetal Muscle Leg|Input Input GSM1058788
9 GSM1160189_UW.Fetal_Muscle_Trunk.H3K27ac.H-24851.Histone.DS23303.sga Fetal Muscle Trunk|H3K27ac H3K27ac GSM1160189
10 GSM1160191_UW.Fetal_Muscle_Trunk.H3K27me3.H-24851.Histone.DS23036.sga Fetal Muscle Trunk|H3K27me3 H3K27me3 GSM1160191
11 GSM1160195_UW.Fetal_Muscle_Trunk.H3K36me3.H-24851.Histone.DS23037.sga Fetal Muscle Trunk|H3K36me3 H3K36me3 GSM1160195
12 GSM1160197_UW.Fetal_Muscle_Trunk.H3K4me1.H-24851.Histone.DS23308.sga Fetal Muscle Trunk|H3K4me1 H3K4me1 GSM1160197
13 GSM1160200_UW.Fetal_Muscle_Trunk.H3K4me3.H-24851.Histone.DS23302.sga Fetal Muscle Trunk|H3K4me3 H3K4me3 GSM1160200
14 GSM1160203_UW.Fetal_Muscle_Trunk.H3K9me3.H-24851.Histone.DS23309.sga Fetal Muscle Trunk|H3K9me3 H3K9me3 GSM1160203
15 GSM1102809_UW.Fetal_Muscle_Trunk.Input.H-24854.Histone.DS23031.sga Fetal Muscle Trunk|Input Input GSM1102809

DNase FAIRE data:

Filename Description Feature GEO-ID
1 GSM1027349_UW.Fetal_Muscle_Arm.Digital_Genomic_Footprinting.H-23914.DGF.DS17765.sga Fetal Muscle Arm|DNase-HS DNase-HS GSM1027349
2 GSM1024605_UW.Fetal_Muscle_Arm.ChromatinAccessibility.H-24279.DS19439.sga Fetal Muscle Arm|DNase-seq|rep 1 DNase-seq GSM1024605
3 GSM817191_UW.Fetal_Muscle_Arm.ChromatinAccessibility.H-24125.DS18559.sga Fetal Muscle Arm|DNase-seq|rep 10 DNase-seq GSM817191
4 GSM817214_UW.Fetal_Muscle_Arm.ChromatinAccessibility.H-24259.DS19295.sga Fetal Muscle Arm|DNase-seq|rep 11 DNase-seq GSM817214
5 GSM817216_UW.Fetal_Muscle_Arm.ChromatinAccessibility.H-24272.DS19380.sga Fetal Muscle Arm|DNase-seq|rep 12 DNase-seq GSM817216
6 GSM878610_UW.Fetal_Muscle_Arm.ChromatinAccessibility.H-24078.DS18379.sga Fetal Muscle Arm|DNase-seq|rep 13 DNase-seq GSM878610
7 GSM878618_UW.Fetal_Muscle_Arm.ChromatinAccessibility.H-24143.DS18992.sga Fetal Muscle Arm|DNase-seq|rep 14 DNase-seq GSM878618
8 GSM878619_UW.Fetal_Muscle_Arm.ChromatinAccessibility.H-24198.DS19051.sga Fetal Muscle Arm|DNase-seq|rep 15 DNase-seq GSM878619
9 GSM878620_UW.Fetal_Muscle_Arm.ChromatinAccessibility.H-24218.DS19053.sga Fetal Muscle Arm|DNase-seq|rep 16 DNase-seq GSM878620
10 GSM878625_UW.Fetal_Muscle_Arm.ChromatinAccessibility.H-24244.DS19270.sga Fetal Muscle Arm|DNase-seq|rep 17 DNase-seq GSM878625
11 GSM878638_UW.Fetal_Muscle_Arm.ChromatinAccessibility.H-24297.DS19646.sga Fetal Muscle Arm|DNase-seq|rep 18 DNase-seq GSM878638
12 GSM701506_UW.Fetal_Muscle_Arm.ChromatinAccessibility.H-23808.DS17432.sga Fetal Muscle Arm|DNase-seq|rep 2 DNase-seq GSM701506
13 GSM701535_UW.Fetal_Muscle_Arm.ChromatinAccessibility.H-23964.DS17848.sga Fetal Muscle Arm|DNase-seq|rep 3 DNase-seq GSM701535
14 GSM774223_UW.Fetal_Muscle_Arm.ChromatinAccessibility.H-23914.DS17765.sga Fetal Muscle Arm|DNase-seq|rep 4 DNase-seq GSM774223
15 GSM774226_UW.Fetal_Muscle_Arm.ChromatinAccessibility.H-23941.DS17825.sga Fetal Muscle Arm|DNase-seq|rep 5 DNase-seq GSM774226
16 GSM774234_UW.Fetal_Muscle_Arm.ChromatinAccessibility.H-24005.DS18080.sga Fetal Muscle Arm|DNase-seq|rep 6 DNase-seq GSM774234
17 GSM774239_UW.Fetal_Muscle_Arm.ChromatinAccessibility.H-24042.DS18176.sga Fetal Muscle Arm|DNase-seq|rep 7 DNase-seq GSM774239
18 GSM817178_UW.Fetal_Muscle_Arm.ChromatinAccessibility.H-24089.DS18452.sga Fetal Muscle Arm|DNase-seq|rep 8 DNase-seq GSM817178
19 GSM817184_UW.Fetal_Muscle_Arm.ChromatinAccessibility.H-24111.DS18473.sga Fetal Muscle Arm|DNase-seq|rep 9 DNase-seq GSM817184
20 GSM1027330_UW.Fetal_Muscle_Back.ChromatinAccessibility.H-24510.DNase.DS20789.sga Fetal Muscle Back|DNase-seq|rep 1 DNase-seq GSM1027330
21 GSM817212_UW.Fetal_Muscle_Back.ChromatinAccessibility.H-24244.DS19283.sga Fetal Muscle Back|DNase-seq|rep 10 DNase-seq GSM817212
22 GSM817217_UW.Fetal_Muscle_Back.ChromatinAccessibility.H-24272.DS19384.sga Fetal Muscle Back|DNase-seq|rep 11 DNase-seq GSM817217
23 GSM878611_UW.Fetal_Muscle_Back.ChromatinAccessibility.H-24089.DS18454.sga Fetal Muscle Back|DNase-seq|rep 12 DNase-seq GSM878611
24 GSM878632_UW.Fetal_Muscle_Back.ChromatinAccessibility.H-24279.DS19441.sga Fetal Muscle Back|DNase-seq|rep 13 DNase-seq GSM878632
25 GSM878639_UW.Fetal_Muscle_Back.ChromatinAccessibility.H-24297.DS19648.sga Fetal Muscle Back|DNase-seq|rep 14 DNase-seq GSM878639
26 GSM878655_UW.Fetal_Muscle_Back.ChromatinAccessibility.H-24409.DS20244.sga Fetal Muscle Back|DNase-seq|rep 15 DNase-seq GSM878655
27 GSM1027341_UW.Fetal_Muscle_Back.ChromatinAccessibility.H-24595.DNase.DS21048.sga Fetal Muscle Back|DNase-seq|rep 2 DNase-seq GSM1027341
28 GSM701536_UW.Fetal_Muscle_Back.ChromatinAccessibility.H-23964.DS17850.sga Fetal Muscle Back|DNase-seq|rep 3 DNase-seq GSM701536
29 GSM774224_UW.Fetal_Muscle_Back.ChromatinAccessibility.H-23914.DS17767.sga Fetal Muscle Back|DNase-seq|rep 4 DNase-seq GSM774224
30 GSM774235_UW.Fetal_Muscle_Back.ChromatinAccessibility.H-24005.DS18083.sga Fetal Muscle Back|DNase-seq|rep 5 DNase-seq GSM774235
31 GSM817171_UW.Fetal_Muscle_Back.ChromatinAccessibility.H-24078.DS18377.sga Fetal Muscle Back|DNase-seq|rep 6 DNase-seq GSM817171
32 GSM817182_UW.Fetal_Muscle_Back.ChromatinAccessibility.H-24111.DS18468.sga Fetal Muscle Back|DNase-seq|rep 7 DNase-seq GSM817182
33 GSM817200_UW.Fetal_Muscle_Back.ChromatinAccessibility.H-24143.DS18842.sga Fetal Muscle Back|DNase-seq|rep 8 DNase-seq GSM817200
34 GSM817207_UW.Fetal_Muscle_Back.ChromatinAccessibility.H-24218.DS19117.sga Fetal Muscle Back|DNase-seq|rep 9 DNase-seq GSM817207
35 GSM1027309_UW.Fetal_Muscle_Leg.ChromatinAccessibility.H-24272.DNase.DS19382.sga Fetal Muscle Leg|DNase-seq|rep 1 DNase-seq GSM1027309
36 GSM878622_UW.Fetal_Muscle_Leg.ChromatinAccessibility.H-24198.DS19158.sga Fetal Muscle Leg|DNase-seq|rep 10 DNase-seq GSM878622
37 GSM878626_UW.Fetal_Muscle_Leg.ChromatinAccessibility.H-24244.DS19272.sga Fetal Muscle Leg|DNase-seq|rep 11 DNase-seq GSM878626
38 GSM878631_UW.Fetal_Muscle_Leg.ChromatinAccessibility.H-24279.DS19436.sga Fetal Muscle Leg|DNase-seq|rep 12 DNase-seq GSM878631
39 GSM878637_UW.Fetal_Muscle_Leg.ChromatinAccessibility.H-24297.DS19643.sga Fetal Muscle Leg|DNase-seq|rep 13 DNase-seq GSM878637
40 GSM878653_UW.Fetal_Muscle_Leg.ChromatinAccessibility.H-24409.DS20239.sga Fetal Muscle Leg|DNase-seq|rep 14 DNase-seq GSM878653
41 GSM1027333_UW.Fetal_Muscle_Leg.ChromatinAccessibility.H-24510.DNase.DS20797.sga Fetal Muscle Leg|DNase-seq|rep 2 DNase-seq GSM1027333
42 GSM701505_UW.Fetal_Muscle_Leg.ChromatinAccessibility.H-23808.DS17429.sga Fetal Muscle Leg|DNase-seq|rep 3 DNase-seq GSM701505
43 GSM774242_UW.Fetal_Muscle_Leg.ChromatinAccessibility.H-24078.DS18386.sga Fetal Muscle Leg|DNase-seq|rep 4 DNase-seq GSM774242
44 GSM817179_UW.Fetal_Muscle_Leg.ChromatinAccessibility.H-24089.DS18456.sga Fetal Muscle Leg|DNase-seq|rep 5 DNase-seq GSM817179
45 GSM817183_UW.Fetal_Muscle_Leg.ChromatinAccessibility.H-24111.DS18471.sga Fetal Muscle Leg|DNase-seq|rep 6 DNase-seq GSM817183
46 GSM817201_UW.Fetal_Muscle_Leg.ChromatinAccessibility.H-24143.DS18844.sga Fetal Muscle Leg|DNase-seq|rep 7 DNase-seq GSM817201
47 GSM817206_UW.Fetal_Muscle_Leg.ChromatinAccessibility.H-24218.DS19115.sga Fetal Muscle Leg|DNase-seq|rep 8 DNase-seq GSM817206
48 GSM817213_UW.Fetal_Muscle_Leg.ChromatinAccessibility.H-24259.DS19291.sga Fetal Muscle Leg|DNase-seq|rep 9 DNase-seq GSM817213
49 GSM774238_UW.Fetal_Muscle_Lower_Limb_Skeletal.ChromatinAccessibility.H-24042.DS18174.sga Fetal Muscle Lower Limb Skeletal|DNase-seq DNase-seq GSM774238
50 GSM701533_UW.Fetal_Muscle_Trunk.ChromatinAccessibility.H-23941.DS17827.sga Fetal Muscle Trunk|DNase-seq|rep 1 DNase-seq GSM701533
51 GSM878654_UW.Fetal_Muscle_Trunk.ChromatinAccessibility.H-24409.DS20242.sga Fetal Muscle Trunk|DNase-seq|rep 2 DNase-seq GSM878654
52 GSM878664_UW.Fetal_Muscle_Trunk.ChromatinAccessibility.H-24507.DS20544.sga Fetal Muscle Trunk|DNase-seq|rep 3 DNase-seq GSM878664
53 GSM701522_UW.Fetal_Muscle_Upper_Limb_Skeletal.ChromatinAccessibility.H-23887.DS17661.sga Fetal Muscle Upper Limb Skeletal|DNase-seq DNase-seq GSM701522
54 GSM774218_UW.Fetal_Muscle_Upper_Trunk.ChromatinAccessibility.H-23887.DS17664.sga Fetal Muscle Upper Trunk|DNase-seq DNase-seq GSM774218

Technical Notes

BED files were downloaded from the FTP and converted in SGA format using bed2sga (ChIP-seq).

References

Genome browser viewable files