This samples serie was produced as part of the RoadMap Project.
Files downloaded from GEO FTP server: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/roadmapepigenomics/by_sample/
Input file format: BED
From H. sapiens (Feb 2009 GRCh37/hg19).
ChIP-seq data:
Filename | Description | Feature | GEO-ID | |
1 | GSM956009_UCSD.Ovary.H3K27ac.STL002.sga | Ovary|H3K27ac | H3K27ac | GSM956009 |
2 | GSM1013143_UCSD.Ovary.H3K36me3.STL002.sga | Ovary|H3K36me3 | H3K36me3 | GSM1013143 |
3 | GSM1013148_UCSD.Ovary.H3K4me1.STL002.sga | Ovary|H3K4me1 | H3K4me1 | GSM1013148 |
4 | GSM1013162_UCSD.Ovary.H3K9me3.STL002.sga | Ovary|H3K9me3 | H3K9me3 | GSM1013162 |
5 | GSM1013171_UCSD.Ovary.Input.STL002.sga | Ovary|Input | Input | GSM1013171 |
DNase FAIRE data:
Filename | Description | Feature | GEO-ID | |
1 | GSM1027334_UW.Ovary.ChromatinAccessibility.STL002.DNase.DS20827.sga | Ovary|DNase-seq | DNase-seq | GSM1027334 |
BED files were downloaded from the FTP and converted in SGA format using bed2sga (ChIP-seq).