This samples serie was produced as part of the RoadMap Project.
Files downloaded from GEO FTP server: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/roadmapepigenomics/by_sample/
Input file format: BED
From H. sapiens (Feb 2009 GRCh37/hg19).
DNase FAIRE data:
Filename | Description | Feature | GEO-ID | |
1 | GSM1027306_UW.Fetal_Ovary.ChromatinAccessibility.H23758_H23604.DNase.DS17445.sga | Fetal Ovary|DNase-seq | DNase-seq | GSM1027306 |
2 | GSM1027319_UW.Fetal_Testes.ChromatinAccessibility.H23914_H24089_H24218_H24244.DNase.DS20170.sga | Fetal Testes|DNase-seq|rep 1 | DNase-seq | GSM1027319 |
3 | GSM878617_UW.Fetal_Testes.ChromatinAccessibility.H24198_H23640_H24042.DS18942.sga | Fetal Testes|DNase-seq|rep 2 | DNase-seq | GSM878617 |
BED files were downloaded from the FTP and converted in SGA format using bed2sga (ChIP-seq).