This samples serie was produced as part of the RoadMap Project.
Files downloaded from GEO FTP server: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/roadmapepigenomics/by_sample/
Input file format: BED
From H. sapiens (Feb 2009 GRCh37/hg19).
DNase FAIRE data:
Filename | Description | Feature | GEO-ID | |
1 | GSM701509_UW.Fetal_Spleen.ChromatinAccessibility.H-23399.DS17448.sga | Fetal Spleen|DNase-seq | DNase-seq | GSM701509 |
2 | GSM878633_UW.Fibroblasts_Fetal_Skin_Scalp.ChromatinAccessibility.H-24259.DS19444.sga | Fibroblasts Fetal Skin Scalp|DNase-seq|rep 1 | DNase-seq | GSM878633 |
3 | GSM878634_UW.Fibroblasts_Fetal_Skin_Scalp.ChromatinAccessibility.H-24259.DS19449.sga | Fibroblasts Fetal Skin Scalp|DNase-seq|rep 2 | DNase-seq | GSM878634 |
BED files were downloaded from the FTP and converted in SGA format using bed2sga (ChIP-seq).