Fetal thymus.

Description

This samples serie was produced as part of the RoadMap Project.

Source

Files downloaded from GEO FTP server: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/roadmapepigenomics/by_sample/
Input file format: BED

Samples

From H. sapiens (Feb 2009 GRCh37/hg19).

ChIP-seq data:

	Filename	Description	Feature	GEO-ID
1	GSM1027289_UW.Fetal_Thymus.H3K27ac.H-24644.Histone.DS21783.sga	Fetal Thymus\|H3K27ac	H3K27ac	GSM1027289
2	GSM1027292_UW.Fetal_Thymus.H3K27me3.H-24644.Histone.DS22602.sga	Fetal Thymus\|H3K27me3	H3K27me3	GSM1027292
3	GSM1027295_UW.Fetal_Thymus.H3K36me3.H-24644.Histone.DS22603.sga	Fetal Thymus\|H3K36me3	H3K36me3	GSM1027295
4	GSM1027298_UW.Fetal_Thymus.H3K4me1.H-24644.Histone.DS22601.sga	Fetal Thymus\|H3K4me1	H3K4me1	GSM1027298
5	GSM1027299_UW.Fetal_Thymus.H3K4me3.H-24644.Histone.DS21539.sga	Fetal Thymus\|H3K4me3	H3K4me3	GSM1027299
6	GSM1027303_UW.Fetal_Thymus.H3K9me3.H-24644.Histone.DS22904.sga	Fetal Thymus\|H3K9me3	H3K9me3	GSM1027303
7	GSM1036258_UW.Fetal_Thymus.Input.H-24644.Histone.DS21508.sga	Fetal Thymus\|Input	Input	GSM1036258

DNase FAIRE data:

	Filename	Description	Feature	GEO-ID
1	GSM1027351_UW.Fetal_Thymus.Digital_Genomic_Footprinting.H-24409.DGF.DS20341.sga	Fetal Thymus\|DNase-HS	DNase-HS	GSM1027351
2	GSM1027313_UW.Fetal_Thymus.ChromatinAccessibility.H-24297.DNase.DS19675.sga	Fetal Thymus\|DNase-seq\|rep 1	DNase-seq	GSM1027313
3	GSM878656_UW.Fetal_Thymus.ChromatinAccessibility.H-24401.DS20335.sga	Fetal Thymus\|DNase-seq\|rep 10	DNase-seq	GSM878656
4	GSM878657_UW.Fetal_Thymus.ChromatinAccessibility.H-24409.DS20341.sga	Fetal Thymus\|DNase-seq\|rep 11	DNase-seq	GSM878657
5	GSM665823_UW.Fetal_Thymus.ChromatinAccessibility.H-23589.DS16490.sga	Fetal Thymus\|DNase-seq\|rep 2	DNase-seq	GSM665823
6	GSM701497_UW.Fetal_Thymus.ChromatinAccessibility.H-23769.DS17323.sga	Fetal Thymus\|DNase-seq\|rep 3	DNase-seq	GSM701497
7	GSM701513_UW.Fetal_Thymus.ChromatinAccessibility.H-23833.DS17474.sga	Fetal Thymus\|DNase-seq\|rep 4	DNase-seq	GSM701513
8	GSM701537_UW.Fetal_Thymus.ChromatinAccessibility.H-23964.DS17875.sga	Fetal Thymus\|DNase-seq\|rep 5	DNase-seq	GSM701537
9	GSM774204_UW.Fetal_Thymus.ChromatinAccessibility.H-23663.DS16841.sga	Fetal Thymus\|DNase-seq\|rep 6	DNase-seq	GSM774204
10	GSM774230_UW.Fetal_Thymus.ChromatinAccessibility.H-23964.DS17876.sga	Fetal Thymus\|DNase-seq\|rep 7	DNase-seq	GSM774230
11	GSM817172_UW.Fetal_Thymus.ChromatinAccessibility.H-24078.DS18382.sga	Fetal Thymus\|DNase-seq\|rep 8	DNase-seq	GSM817172
12	GSM878627_UW.Fetal_Thymus.ChromatinAccessibility.H-24259.DS19287.sga	Fetal Thymus\|DNase-seq\|rep 9	DNase-seq	GSM878627

Technical Notes

BED files were downloaded from the FTP and converted in SGA format using bed2sga (ChIP-seq).

References

Romanoski CE, Glass CK, Stunnenberg HG, Wilson L, Almouzni G
Epigenomics: Roadmap for regulation. Nature. 2015 Feb 19;518(7539):314-6. doi: 10.1038/518314a. 25693562

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