# Strand correlation plots for ChIP-seq data

./singhal16_strand_cor.pl ../.. < ../../singhal16.txt | sh &
./singhal16_strand_cor_plot.pl  < ../../singhal16.txt | Rscript --vanilla -
mv singhal16_strand_cor.pdf ../

# Motif enrichment plots for ChIP-seq data: 
# Motifs: ESR1, NR3C1 (for PGR). Two seperate plots for ESR1+PGR reChIP samples

./singhal16_motif_enr.pl ../.. < ../../singhal16.txt ../.. | sh &
./singhal16_motif_enr_plot.pl  < ../../singhal16.txt | Rscript --vanilla -
mv singhal16_motif_enr.pdf ../

# Optional: rm results/*txt 
