Stelloo 2018, ChIP-seq against AR, H3K27ac, H3K4me3 and H3K27me3 in prostate cancer primary tumors.

ChIP-seq against AR, H3K27ac, H3K4me3 and H3K27me3 in prostate cancer primary tumors. Patients are from the "Porto cohort", selected for a prostate cancer prevention trial. Patients were classifed as "Case" if they developed recurrence within ~5 years, or as "Control" if the developed no recurrence within ~10 years. Two patients without follow-up data were classified as "Exclude" by the authors of this study.

• Raw data was downloaded from SRA: ftp://ftp-trace.ncbi.nlm.nih.gov/sra/sra-instant/reads/ByRun/sra/SRR,
  SRX identifiers were extracted from: ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE120nnn/GSE120738/matrix/
• Input file format: SRA
• Download date: 11-4-2019

From H. sapiens (Feb 2009 GRCh37/hg19).

ChIP-seq data:

	Filename	Description	Feature	GEO-ID
1	GSM3409642_P223T_AR.sga	PC primary tumor P223T|AR|Case	AR	GSM3409642
2	GSM3409643_P227T_AR.sga	PC primary tumor P227T|AR|Case	AR	GSM3409643
3	GSM3409644_P228T_AR.sga	PC primary tumor P228T|AR|Control	AR	GSM3409644
4	GSM3409645_P229T_AR.sga	PC primary tumor P229T|AR|Case	AR	GSM3409645
5	GSM3409646_P230T_AR.sga	PC primary tumor P230T|AR|Case	AR	GSM3409646
6	GSM3409647_P249T_AR.sga	PC primary tumor P249T|AR|Control	AR	GSM3409647
7	GSM3409648_P252T_AR.sga	PC primary tumor P252T|AR|Control	AR	GSM3409648
8	GSM3409649_P254T_AR.sga	PC primary tumor P254T|AR|Exclude	AR	GSM3409649
9	GSM3409650_P255T_AR.sga	PC primary tumor P255T|AR|Case	AR	GSM3409650
10	GSM3409651_P257T_AR.sga	PC primary tumor P257T|AR|Control	AR	GSM3409651
11	GSM3409652_P261T_AR.sga	PC primary tumor P261T|AR|Case	AR	GSM3409652
12	GSM3409653_P262T_AR.sga	PC primary tumor P262T|AR|Control	AR	GSM3409653
13	GSM3409654_P263T_AR.sga	PC primary tumor P263T|AR|Control	AR	GSM3409654
14	GSM3409655_P265T_AR.sga	PC primary tumor P265T|AR|Case	AR	GSM3409655
15	GSM3409656_P266T_AR.sga	PC primary tumor P266T|AR|Control	AR	GSM3409656
16	GSM3409657_P268T_AR.sga	PC primary tumor P268T|AR|Case	AR	GSM3409657
17	GSM3409658_P272T_AR.sga	PC primary tumor P272T|AR|Control	AR	GSM3409658
18	GSM3409659_P274T_AR.sga	PC primary tumor P274T|AR|Case	AR	GSM3409659
19	GSM3409660_P276T_AR.sga	PC primary tumor P276T|AR|Case	AR	GSM3409660
20	GSM3409661_P279T_AR.sga	PC primary tumor P279T|AR|Control	AR	GSM3409661
21	GSM3409662_P280T_AR.sga	PC primary tumor P280T|AR|Control	AR	GSM3409662
22	GSM3409663_P291T_AR.sga	PC primary tumor P291T|AR|Exclude	AR	GSM3409663
23	GSM3409664_P294T_AR.sga	PC primary tumor P294T|AR|Case	AR	GSM3409664
24	GSM3409665_P295T_AR.sga	PC primary tumor P295T|AR|Case	AR	GSM3409665
25	GSM3409666_P297T_AR.sga	PC primary tumor P297T|AR|Control	AR	GSM3409666
26	GSM3409667_P298T_AR.sga	PC primary tumor P298T|AR|Case	AR	GSM3409667
27	GSM3409668_P300T_AR.sga	PC primary tumor P300T|AR|Control	AR	GSM3409668
28	GSM3409669_P301T_AR.sga	PC primary tumor P301T|AR|Case	AR	GSM3409669
29	GSM3409670_P305T_AR.sga	PC primary tumor P305T|AR|Control	AR	GSM3409670
30	GSM3409671_P309T_AR.sga	PC primary tumor P309T|AR|Case	AR	GSM3409671
31	GSM3409672_P310T_AR.sga	PC primary tumor P310T|AR|Case	AR	GSM3409672
32	GSM3409673_P313T_AR.sga	PC primary tumor P313T|AR|Case	AR	GSM3409673
33	GSM3409674_P324T_AR.sga	PC primary tumor P324T|AR|Control	AR	GSM3409674
34	GSM3409675_P327T_AR.sga	PC primary tumor P327T|AR|Case	AR	GSM3409675
35	GSM3409676_P328T_AR.sga	PC primary tumor P328T|AR|Control	AR	GSM3409676
36	GSM3409677_P336T_AR.sga	PC primary tumor P336T|AR|Control	AR	GSM3409677
37	GSM3409678_P342T_AR.sga	PC primary tumor P342T|AR|Control	AR	GSM3409678
38	GSM3409679_P343T_AR.sga	PC primary tumor P343T|AR|Case	AR	GSM3409679
39	GSM3409680_P348T_AR.sga	PC primary tumor P348T|AR|Case	AR	GSM3409680
40	GSM3409681_P349T_AR.sga	PC primary tumor P349T|AR|Control	AR	GSM3409681
41	GSM3409682_P352T_AR.sga	PC primary tumor P352T|AR|Case	AR	GSM3409682
42	GSM3409683_P355T_AR.sga	PC primary tumor P355T|AR|Case	AR	GSM3409683
43	GSM3409684_P416T_AR.sga	PC primary tumor P416T|AR|Control	AR	GSM3409684
44	GSM3409685_P426T_AR.sga	PC primary tumor P426T|AR|Case	AR	GSM3409685
45	GSM3409686_P427T_AR.sga	PC primary tumor P427T|AR|Control	AR	GSM3409686
46	GSM3409687_P431T_AR.sga	PC primary tumor P431T|AR|Case	AR	GSM3409687
47	GSM3409688_P433T_AR.sga	PC primary tumor P433T|AR|Control	AR	GSM3409688
48	GSM3409689_P444T_AR.sga	PC primary tumor P444T|AR|Control	AR	GSM3409689
49	GSM3409690_P449T_AR.sga	PC primary tumor P449T|AR|Case	AR	GSM3409690
50	GSM3409691_P450T_AR.sga	PC primary tumor P450T|AR|Case	AR	GSM3409691
51	GSM3409692_P452T_AR.sga	PC primary tumor P452T|AR|Case	AR	GSM3409692
52	GSM3409693_P456T_AR.sga	PC primary tumor P456T|AR|Control	AR	GSM3409693
53	GSM3409694_P462T_AR.sga	PC primary tumor P462T|AR|Case	AR	GSM3409694
54	GSM3409695_P464T_AR.sga	PC primary tumor P464T|AR|Case	AR	GSM3409695
55	GSM3409696_P466T_AR.sga	PC primary tumor P466T|AR|Control	AR	GSM3409696
56	GSM3409697_P475T_AR.sga	PC primary tumor P475T|AR|Control	AR	GSM3409697
57	GSM3409698_P500T_AR.sga	PC primary tumor P500T|AR|Case	AR	GSM3409698
58	GSM3409699_P506T_AR.sga	PC primary tumor P506T|AR|Case	AR	GSM3409699
59	GSM3409700_P507T_AR.sga	PC primary tumor P507T|AR|Control	AR	GSM3409700
60	GSM3409701_P509T_AR.sga	PC primary tumor P509T|AR|Control	AR	GSM3409701
61	GSM3409702_P511T_AR.sga	PC primary tumor P511T|AR|Control	AR	GSM3409702
62	GSM3409703_P513T_AR.sga	PC primary tumor P513T|AR|Control	AR	GSM3409703
63	GSM3409704_P527T_AR.sga	PC primary tumor P527T|AR|Case	AR	GSM3409704
64	GSM3409705_P531T_AR.sga	PC primary tumor P531T|AR|Case	AR	GSM3409705
65	GSM3409706_P533T_AR.sga	PC primary tumor P533T|AR|Control	AR	GSM3409706
66	GSM3409707_P534T_AR.sga	PC primary tumor P534T|AR|Control	AR	GSM3409707
67	GSM3409708_P536T_AR.sga	PC primary tumor P536T|AR|Case	AR	GSM3409708
68	GSM3409709_P540T_AR.sga	PC primary tumor P540T|AR|Control	AR	GSM3409709
69	GSM3409710_P544T_AR.sga	PC primary tumor P544T|AR|Control	AR	GSM3409710
70	GSM3409711_P552T_AR.sga	PC primary tumor P552T|AR|Case	AR	GSM3409711
71	GSM3409712_P555T_AR.sga	PC primary tumor P555T|AR|Control	AR	GSM3409712
72	GSM3409713_P559T_AR.sga	PC primary tumor P559T|AR|Case	AR	GSM3409713
73	GSM3409714_P560T_AR.sga	PC primary tumor P560T|AR|Control	AR	GSM3409714
74	GSM3409715_P593T_AR.sga	PC primary tumor P593T|AR|Control	AR	GSM3409715
75	GSM3409716_P603T_AR.sga	PC primary tumor P603T|AR|Control	AR	GSM3409716
76	GSM3409717_P618T_AR.sga	PC primary tumor P618T|AR|Case	AR	GSM3409717
77	GSM3409718_P643T_AR.sga	PC primary tumor P643T|AR|Case	AR	GSM3409718
78	GSM3409719_P674T_AR.sga	PC primary tumor P674T|AR|Control	AR	GSM3409719
79	GSM3409720_P680T_AR.sga	PC primary tumor P680T|AR|Control	AR	GSM3409720
80	GSM3409721_P695T_AR.sga	PC primary tumor P695T|AR|Control	AR	GSM3409721
81	GSM3409722_P710T_AR.sga	PC primary tumor P710T|AR|Case	AR	GSM3409722
82	GSM3409723_P717T_AR.sga	PC primary tumor P717T|AR|Case	AR	GSM3409723
83	GSM3409724_P730T_AR.sga	PC primary tumor P730T|AR|Case	AR	GSM3409724
84	GSM3409725_P737T_AR.sga	PC primary tumor P737T|AR|Case	AR	GSM3409725
85	GSM3409726_P747T_AR.sga	PC primary tumor P747T|AR|Control	AR	GSM3409726
86	GSM3409727_P779T_AR.sga	PC primary tumor P779T|AR|Control	AR	GSM3409727
87	GSM3409728_P811T_AR.sga	PC primary tumor P811T|AR|Case	AR	GSM3409728
88	GSM3409729_P832T_AR.sga	PC primary tumor P832T|AR|Control	AR	GSM3409729
89	GSM3409730_P327T_H3K27ac.sga	PC primary tumor P327T|H3K27ac|Case	H3K27ac	GSM3409730
90	GSM3409731_P223T_H3K27ac.sga	PC primary tumor P223T|H3K27ac|Case	H3K27ac	GSM3409731
91	GSM3409732_P227T_H3K27ac.sga	PC primary tumor P227T|H3K27ac|Case	H3K27ac	GSM3409732
92	GSM3409733_P313T_H3K27ac.sga	PC primary tumor P313T|H3K27ac|Case	H3K27ac	GSM3409733
93	GSM3409734_P228T_H3K27ac.sga	PC primary tumor P228T|H3K27ac|Control	H3K27ac	GSM3409734
94	GSM3409735_P252T_H3K27ac.sga	PC primary tumor P252T|H3K27ac|Control	H3K27ac	GSM3409735
95	GSM3409736_P257T_H3K27ac.sga	PC primary tumor P257T|H3K27ac|Control	H3K27ac	GSM3409736
96	GSM3409737_P262T_H3K27ac.sga	PC primary tumor P262T|H3K27ac|Control	H3K27ac	GSM3409737
97	GSM3409738_P245T_H3K27ac.sga	PC primary tumor P245T|H3K27ac|Case	H3K27ac	GSM3409738
98	GSM3409739_P229T_H3K27ac.sga	PC primary tumor P229T|H3K27ac|Case	H3K27ac	GSM3409739
99	GSM3409740_P255T_H3K27ac.sga	PC primary tumor P255T|H3K27ac|Case	H3K27ac	GSM3409740
100	GSM3409741_P276T_H3K27ac.sga	PC primary tumor P276T|H3K27ac|Case	H3K27ac	GSM3409741
101	GSM3409742_P352T_H3K27ac.sga	PC primary tumor P352T|H3K27ac|Case	H3K27ac	GSM3409742
102	GSM3409743_P511T_H3K27ac.sga	PC primary tumor P511T|H3K27ac|Control	H3K27ac	GSM3409743
103	GSM3409744_P513T_H3K27ac.sga	PC primary tumor P513T|H3K27ac|Control	H3K27ac	GSM3409744
104	GSM3409745_P533T_H3K27ac.sga	PC primary tumor P533T|H3K27ac|Control	H3K27ac	GSM3409745
105	GSM3409746_P534T_H3K27ac.sga	PC primary tumor P534T|H3K27ac|Control	H3K27ac	GSM3409746
106	GSM3409747_P811T_H3K27ac.sga	PC primary tumor P811T|H3K27ac|Case	H3K27ac	GSM3409747
107	GSM3409748_P466T_H3K27ac.sga	PC primary tumor P466T|H3K27ac|Control	H3K27ac	GSM3409748
108	GSM3409749_P475T_H3K27ac.sga	PC primary tumor P475T|H3K27ac|Control	H3K27ac	GSM3409749
109	GSM3409750_P507T_H3K27ac.sga	PC primary tumor P507T|H3K27ac|Control	H3K27ac	GSM3409750
110	GSM3409751_P509T_H3K27ac.sga	PC primary tumor P509T|H3K27ac|Control	H3K27ac	GSM3409751
111	GSM3409752_P527T_H3K27ac.sga	PC primary tumor P527T|H3K27ac|Case	H3K27ac	GSM3409752
112	GSM3409753_P618T_H3K27ac.sga	PC primary tumor P618T|H3K27ac|Case	H3K27ac	GSM3409753
113	GSM3409754_P710T_H3K27ac.sga	PC primary tumor P710T|H3K27ac|Case	H3K27ac	GSM3409754
114	GSM3409755_P730T_H3K27ac.sga	PC primary tumor P730T|H3K27ac|Case	H3K27ac	GSM3409755
115	GSM3409756_P342T_H3K27ac.sga	PC primary tumor P342T|H3K27ac|Control	H3K27ac	GSM3409756
116	GSM3409757_P416T_H3K27ac.sga	PC primary tumor P416T|H3K27ac|Control	H3K27ac	GSM3409757
117	GSM3409758_P427T_H3K27ac.sga	PC primary tumor P427T|H3K27ac|Control	H3K27ac	GSM3409758
118	GSM3409759_P449T_H3K27ac.sga	PC primary tumor P449T|H3K27ac|Case	H3K27ac	GSM3409759
119	GSM3409760_P462T_H3K27ac.sga	PC primary tumor P462T|H3K27ac|Case	H3K27ac	GSM3409760
120	GSM3409761_P500T_H3K27ac.sga	PC primary tumor P500T|H3K27ac|Case	H3K27ac	GSM3409761
121	GSM3409762_P552T_H3K27ac.sga	PC primary tumor P552T|H3K27ac|Case	H3K27ac	GSM3409762
122	GSM3409763_P261T_H3K27ac.sga	PC primary tumor P261T|H3K27ac|Case	H3K27ac	GSM3409763
123	GSM3409764_P348T_H3K27ac.sga	PC primary tumor P348T|H3K27ac|Case	H3K27ac	GSM3409764
124	GSM3409765_P426T_H3K27ac.sga	PC primary tumor P426T|H3K27ac|Case	H3K27ac	GSM3409765
125	GSM3409766_P431T_H3K27ac.sga	PC primary tumor P431T|H3K27ac|Case	H3K27ac	GSM3409766
126	GSM3409767_P433T_H3K27ac.sga	PC primary tumor P433T|H3K27ac|Control	H3K27ac	GSM3409767
127	GSM3409768_P444T_H3K27ac.sga	PC primary tumor P444T|H3K27ac|Control	H3K27ac	GSM3409768
128	GSM3409769_P456T_H3K27ac.sga	PC primary tumor P456T|H3K27ac|Control	H3K27ac	GSM3409769
129	GSM3409770_P457T_H3K27ac.sga	PC primary tumor P457T|H3K27ac|Control	H3K27ac	GSM3409770
130	GSM3409771_P301T_H3K27ac.sga	PC primary tumor P301T|H3K27ac|Case	H3K27ac	GSM3409771
131	GSM3409772_P324T_H3K27ac.sga	PC primary tumor P324T|H3K27ac|Control	H3K27ac	GSM3409772
132	GSM3409773_P328T_H3K27ac.sga	PC primary tumor P328T|H3K27ac|Control	H3K27ac	GSM3409773
133	GSM3409774_P343T_H3K27ac.sga	PC primary tumor P343T|H3K27ac|Case	H3K27ac	GSM3409774
134	GSM3409775_P823T_H3K27ac.sga	PC primary tumor P823T|H3K27ac|Case	H3K27ac	GSM3409775
135	GSM3409776_P305T_H3K27ac.sga	PC primary tumor P305T|H3K27ac|Control	H3K27ac	GSM3409776
136	GSM3409777_P297T_H3K27ac.sga	PC primary tumor P297T|H3K27ac|Control	H3K27ac	GSM3409777
137	GSM3409778_P300T_H3K27ac.sga	PC primary tumor P300T|H3K27ac|Control	H3K27ac	GSM3409778
138	GSM3409779_P266T_H3K27ac.sga	PC primary tumor P266T|H3K27ac|Control	H3K27ac	GSM3409779
139	GSM3409780_P450T_H3K27ac.sga	PC primary tumor P450T|H3K27ac|Case	H3K27ac	GSM3409780
140	GSM3409781_P506T_H3K27ac.sga	PC primary tumor P506T|H3K27ac|Case	H3K27ac	GSM3409781
141	GSM3409782_P310T_H3K27ac.sga	PC primary tumor P310T|H3K27ac|Case	H3K27ac	GSM3409782
142	GSM3409783_P309T_H3K27ac.sga	PC primary tumor P309T|H3K27ac|Case	H3K27ac	GSM3409783
143	GSM3409784_P268T_H3K27ac.sga	PC primary tumor P268T|H3K27ac|Case	H3K27ac	GSM3409784
144	GSM3409785_P536T_H3K27ac.sga	PC primary tumor P536T|H3K27ac|Case	H3K27ac	GSM3409785
145	GSM3409786_P643T_H3K27ac.sga	PC primary tumor P643T|H3K27ac|Case	H3K27ac	GSM3409786
146	GSM3409787_P717T_H3K27ac.sga	PC primary tumor P717T|H3K27ac|Case	H3K27ac	GSM3409787
147	GSM3409788_P737T_H3K27ac.sga	PC primary tumor P737T|H3K27ac|Case	H3K27ac	GSM3409788
148	GSM3409789_P747T_H3K27ac.sga	PC primary tumor P747T|H3K27ac|Control	H3K27ac	GSM3409789
149	GSM3409790_P779T_H3K27ac.sga	PC primary tumor P779T|H3K27ac|Control	H3K27ac	GSM3409790
150	GSM3409791_P832T_H3K27ac.sga	PC primary tumor P832T|H3K27ac|Control	H3K27ac	GSM3409791
151	GSM3409792_P452T_H3K27ac.sga	PC primary tumor P452T|H3K27ac|Case	H3K27ac	GSM3409792
152	GSM3409793_P464T_H3K27ac.sga	PC primary tumor P464T|H3K27ac|Case	H3K27ac	GSM3409793
153	GSM3409794_P531T_H3K27ac.sga	PC primary tumor P531T|H3K27ac|Case	H3K27ac	GSM3409794
154	GSM3409795_P559T_H3K27ac.sga	PC primary tumor P559T|H3K27ac|Case	H3K27ac	GSM3409795
155	GSM3409796_P560T_H3K27ac.sga	PC primary tumor P560T|H3K27ac|Control	H3K27ac	GSM3409796
156	GSM3409797_P593T_H3K27ac.sga	PC primary tumor P593T|H3K27ac|Control	H3K27ac	GSM3409797
157	GSM3409798_P603T_H3K27ac.sga	PC primary tumor P603T|H3K27ac|Control	H3K27ac	GSM3409798
158	GSM3409799_P555T_H3K27ac.sga	PC primary tumor P555T|H3K27ac|Control	H3K27ac	GSM3409799
159	GSM3409800_P611T_H3K27ac.sga	PC primary tumor P611T|H3K27ac|Control	H3K27ac	GSM3409800
160	GSM3409801_P660T_H3K27ac.sga	PC primary tumor P660T|H3K27ac|Control	H3K27ac	GSM3409801
161	GSM3409802_P265T_H3K27ac.sga	PC primary tumor P265T|H3K27ac|Case	H3K27ac	GSM3409802
162	GSM3409803_P294T_H3K27ac.sga	PC primary tumor P294T|H3K27ac|Case	H3K27ac	GSM3409803
163	GSM3409804_P355T_H3K27ac.sga	PC primary tumor P355T|H3K27ac|Case	H3K27ac	GSM3409804
164	GSM3409805_P540T_H3K27ac.sga	PC primary tumor P540T|H3K27ac|Control	H3K27ac	GSM3409805
165	GSM3409806_P544T_H3K27ac.sga	PC primary tumor P544T|H3K27ac|Control	H3K27ac	GSM3409806
166	GSM3409807_P674T_H3K27ac.sga	PC primary tumor P674T|H3K27ac|Control	H3K27ac	GSM3409807
167	GSM3409808_P680T_H3K27ac.sga	PC primary tumor P680T|H3K27ac|Control	H3K27ac	GSM3409808
168	GSM3409809_P695T_H3K27ac.sga	PC primary tumor P695T|H3K27ac|Control	H3K27ac	GSM3409809
169	GSM3409810_P298T_H3K27ac.sga	PC primary tumor P298T|H3K27ac|Case	H3K27ac	GSM3409810
170	GSM3409811_P263T_H3K27ac.sga	PC primary tumor P263T|H3K27ac|Control	H3K27ac	GSM3409811
171	GSM3409812_P254T_H3K27ac.sga	PC primary tumor P254T|H3K27ac|Exclude	H3K27ac	GSM3409812
172	GSM3409813_P295T_H3K27ac.sga	PC primary tumor P295T|H3K27ac|Case	H3K27ac	GSM3409813
173	GSM3409814_P272T_H3K27ac.sga	PC primary tumor P272T|H3K27ac|Control	H3K27ac	GSM3409814
174	GSM3409815_P279T_H3K27ac.sga	PC primary tumor P279T|H3K27ac|Control	H3K27ac	GSM3409815
175	GSM3409816_P249T_H3K27ac.sga	PC primary tumor P249T|H3K27ac|Control	H3K27ac	GSM3409816
176	GSM3409817_P291T_H3K27ac.sga	PC primary tumor P291T|H3K27ac|Exclude	H3K27ac	GSM3409817
177	GSM3409818_P280T_H3K27ac.sga	PC primary tumor P280T|H3K27ac|Control	H3K27ac	GSM3409818
178	GSM3409819_P274T_H3K27ac.sga	PC primary tumor P274T|H3K27ac|Case	H3K27ac	GSM3409819
179	GSM3409820_P230T_H3K27ac.sga	PC primary tumor P230T|H3K27ac|Case	H3K27ac	GSM3409820
180	GSM3409821_P336T_H3K27ac.sga	PC primary tumor P336T|H3K27ac|Control	H3K27ac	GSM3409821
181	GSM3409822_P223T_H3K4me3.sga	PC primary tumor P223T|H3K4me3|Case	H3K4me3	GSM3409822
182	GSM3409823_P227T_H3K4me3.sga	PC primary tumor P227T|H3K4me3|Case	H3K4me3	GSM3409823
183	GSM3409824_P229T_H3K4me3.sga	PC primary tumor P229T|H3K4me3|Case	H3K4me3	GSM3409824
184	GSM3409825_P230T_H3K4me3.sga	PC primary tumor P230T|H3K4me3|Case	H3K4me3	GSM3409825
185	GSM3409826_P249T_H3K4me3.sga	PC primary tumor P249T|H3K4me3|Control	H3K4me3	GSM3409826
186	GSM3409827_P254T_H3K4me3.sga	PC primary tumor P254T|H3K4me3|Exclude	H3K4me3	GSM3409827
187	GSM3409828_P261T_H3K4me3.sga	PC primary tumor P261T|H3K4me3|Case	H3K4me3	GSM3409828
188	GSM3409829_P263T_H3K4me3.sga	PC primary tumor P263T|H3K4me3|Control	H3K4me3	GSM3409829
189	GSM3409830_P265T_H3K4me3.sga	PC primary tumor P265T|H3K4me3|Case	H3K4me3	GSM3409830
190	GSM3409831_P268T_H3K4me3.sga	PC primary tumor P268T|H3K4me3|Case	H3K4me3	GSM3409831
191	GSM3409832_P272T_H3K4me3.sga	PC primary tumor P272T|H3K4me3|Control	H3K4me3	GSM3409832
192	GSM3409833_P274T_H3K4me3.sga	PC primary tumor P274T|H3K4me3|Case	H3K4me3	GSM3409833
193	GSM3409834_P276T_H3K4me3.sga	PC primary tumor P276T|H3K4me3|Case	H3K4me3	GSM3409834
194	GSM3409835_P279T_H3K4me3.sga	PC primary tumor P279T|H3K4me3|Control	H3K4me3	GSM3409835
195	GSM3409836_P280T_H3K4me3.sga	PC primary tumor P280T|H3K4me3|Control	H3K4me3	GSM3409836
196	GSM3409837_P291T_H3K4me3.sga	PC primary tumor P291T|H3K4me3|Exclude	H3K4me3	GSM3409837
197	GSM3409838_P294T_H3K4me3.sga	PC primary tumor P294T|H3K4me3|Case	H3K4me3	GSM3409838
198	GSM3409839_P295T_H3K4me3.sga	PC primary tumor P295T|H3K4me3|Case	H3K4me3	GSM3409839
199	GSM3409840_P298T_H3K4me3.sga	PC primary tumor P298T|H3K4me3|Case	H3K4me3	GSM3409840
200	GSM3409841_P300T_H3K4me3.sga	PC primary tumor P300T|H3K4me3|Control	H3K4me3	GSM3409841
201	GSM3409842_P301T_H3K4me3.sga	PC primary tumor P301T|H3K4me3|Case	H3K4me3	GSM3409842
202	GSM3409843_P309T_H3K4me3.sga	PC primary tumor P309T|H3K4me3|Case	H3K4me3	GSM3409843
203	GSM3409844_P310T_H3K4me3.sga	PC primary tumor P310T|H3K4me3|Case	H3K4me3	GSM3409844
204	GSM3409845_P328T_H3K4me3.sga	PC primary tumor P328T|H3K4me3|Control	H3K4me3	GSM3409845
205	GSM3409846_P336T_H3K4me3.sga	PC primary tumor P336T|H3K4me3|Control	H3K4me3	GSM3409846
206	GSM3409847_P355T_H3K4me3.sga	PC primary tumor P355T|H3K4me3|Case	H3K4me3	GSM3409847
207	GSM3409848_P431T_H3K4me3.sga	PC primary tumor P431T|H3K4me3|Case	H3K4me3	GSM3409848
208	GSM3409849_P433T_H3K4me3.sga	PC primary tumor P433T|H3K4me3|Control	H3K4me3	GSM3409849
209	GSM3409850_P449T_H3K4me3.sga	PC primary tumor P449T|H3K4me3|Case	H3K4me3	GSM3409850
210	GSM3409851_P456T_H3K4me3.sga	PC primary tumor P456T|H3K4me3|Control	H3K4me3	GSM3409851
211	GSM3409852_P462T_H3K4me3.sga	PC primary tumor P462T|H3K4me3|Case	H3K4me3	GSM3409852
212	GSM3409853_P500T_H3K4me3.sga	PC primary tumor P500T|H3K4me3|Case	H3K4me3	GSM3409853
213	GSM3409854_P506T_H3K4me3.sga	PC primary tumor P506T|H3K4me3|Case	H3K4me3	GSM3409854
214	GSM3409855_P507T_H3K4me3.sga	PC primary tumor P507T|H3K4me3|Control	H3K4me3	GSM3409855
215	GSM3409856_P509T_H3K4me3.sga	PC primary tumor P509T|H3K4me3|Control	H3K4me3	GSM3409856
216	GSM3409857_P511T_H3K4me3.sga	PC primary tumor P511T|H3K4me3|Control	H3K4me3	GSM3409857
217	GSM3409858_P527T_H3K4me3.sga	PC primary tumor P527T|H3K4me3|Case	H3K4me3	GSM3409858
218	GSM3409859_P533T_H3K4me3.sga	PC primary tumor P533T|H3K4me3|Control	H3K4me3	GSM3409859
219	GSM3409860_P534T_H3K4me3.sga	PC primary tumor P534T|H3K4me3|Control	H3K4me3	GSM3409860
220	GSM3409861_P536T_H3K4me3.sga	PC primary tumor P536T|H3K4me3|Case	H3K4me3	GSM3409861
221	GSM3409862_P540T_H3K4me3.sga	PC primary tumor P540T|H3K4me3|Control	H3K4me3	GSM3409862
222	GSM3409863_P541T_H3K4me3.sga	PC primary tumor P541T|H3K4me3|Control	H3K4me3	GSM3409863
223	GSM3409864_P544T_H3K4me3.sga	PC primary tumor P544T|H3K4me3|Control	H3K4me3	GSM3409864
224	GSM3409865_P555T_H3K4me3.sga	PC primary tumor P555T|H3K4me3|Control	H3K4me3	GSM3409865
225	GSM3409866_P643T_H3K4me3.sga	PC primary tumor P643T|H3K4me3|Case	H3K4me3	GSM3409866
226	GSM3409867_P660T_H3K4me3.sga	PC primary tumor P660T|H3K4me3|Control	H3K4me3	GSM3409867
227	GSM3409868_P680T_H3K4me3.sga	PC primary tumor P680T|H3K4me3|Control	H3K4me3	GSM3409868
228	GSM3409869_P695T_H3K4me3.sga	PC primary tumor P695T|H3K4me3|Control	H3K4me3	GSM3409869
229	GSM3409870_P710T_H3K4me3.sga	PC primary tumor P710T|H3K4me3|Case	H3K4me3	GSM3409870
230	GSM3409871_P717T_H3K4me3.sga	PC primary tumor P717T|H3K4me3|Case	H3K4me3	GSM3409871
231	GSM3409872_P730T_H3K4me3.sga	PC primary tumor P730T|H3K4me3|Case	H3K4me3	GSM3409872
232	GSM3409873_P737T_H3K4me3.sga	PC primary tumor P737T|H3K4me3|Case	H3K4me3	GSM3409873
233	GSM3409874_P747T_H3K4me3.sga	PC primary tumor P747T|H3K4me3|Control	H3K4me3	GSM3409874
234	GSM3409875_P779T_H3K4me3.sga	PC primary tumor P779T|H3K4me3|Control	H3K4me3	GSM3409875
235	GSM3409876_P823T_H3K4me3.sga	PC primary tumor P823T|H3K4me3|Case	H3K4me3	GSM3409876
236	GSM3409877_P832T_H3K4me3.sga	PC primary tumor P832T|H3K4me3|Control	H3K4me3	GSM3409877
237	GSM3409878_P327T_H3K27me3.sga	PC primary tumor P327T|H3K27me3|Case	H3K27me3	GSM3409878
238	GSM3409879_P223T_H3K27me3.sga	PC primary tumor P223T|H3K27me3|Case	H3K27me3	GSM3409879
239	GSM3409880_P228T_H3K27me3.sga	PC primary tumor P228T|H3K27me3|Control	H3K27me3	GSM3409880
240	GSM3409881_P245T_H3K27me3.sga	PC primary tumor P245T|H3K27me3|Case	H3K27me3	GSM3409881
241	GSM3409882_P229T_H3K27me3.sga	PC primary tumor P229T|H3K27me3|Case	H3K27me3	GSM3409882
242	GSM3409883_P276T_H3K27me3.sga	PC primary tumor P276T|H3K27me3|Case	H3K27me3	GSM3409883
243	GSM3409884_P352T_H3K27me3.sga	PC primary tumor P352T|H3K27me3|Case	H3K27me3	GSM3409884
244	GSM3409885_P511T_H3K27me3.sga	PC primary tumor P511T|H3K27me3|Control	H3K27me3	GSM3409885
245	GSM3409886_P513T_H3K27me3.sga	PC primary tumor P513T|H3K27me3|Control	H3K27me3	GSM3409886
246	GSM3409887_P533T_H3K27me3.sga	PC primary tumor P533T|H3K27me3|Control	H3K27me3	GSM3409887
247	GSM3409888_P534T_H3K27me3.sga	PC primary tumor P534T|H3K27me3|Control	H3K27me3	GSM3409888
248	GSM3409889_P811T_H3K27me3.sga	PC primary tumor P811T|H3K27me3|Case	H3K27me3	GSM3409889
249	GSM3409890_P466T_H3K27me3.sga	PC primary tumor P466T|H3K27me3|Control	H3K27me3	GSM3409890
250	GSM3409891_P475T_H3K27me3.sga	PC primary tumor P475T|H3K27me3|Control	H3K27me3	GSM3409891
251	GSM3409892_P507T_H3K27me3.sga	PC primary tumor P507T|H3K27me3|Control	H3K27me3	GSM3409892
252	GSM3409893_P509T_H3K27me3.sga	PC primary tumor P509T|H3K27me3|Control	H3K27me3	GSM3409893
253	GSM3409894_P527T_H3K27me3.sga	PC primary tumor P527T|H3K27me3|Case	H3K27me3	GSM3409894
254	GSM3409895_P618T_H3K27me3.sga	PC primary tumor P618T|H3K27me3|Case	H3K27me3	GSM3409895
255	GSM3409896_P710T_H3K27me3.sga	PC primary tumor P710T|H3K27me3|Case	H3K27me3	GSM3409896
256	GSM3409897_P730T_H3K27me3.sga	PC primary tumor P730T|H3K27me3|Case	H3K27me3	GSM3409897
257	GSM3409898_P342T_H3K27me3.sga	PC primary tumor P342T|H3K27me3|Control	H3K27me3	GSM3409898
258	GSM3409899_P427T_H3K27me3.sga	PC primary tumor P427T|H3K27me3|Control	H3K27me3	GSM3409899
259	GSM3409900_P449T_H3K27me3.sga	PC primary tumor P449T|H3K27me3|Case	H3K27me3	GSM3409900
260	GSM3409901_P500T_H3K27me3.sga	PC primary tumor P500T|H3K27me3|Case	H3K27me3	GSM3409901
261	GSM3409902_P552T_H3K27me3.sga	PC primary tumor P552T|H3K27me3|Case	H3K27me3	GSM3409902
262	GSM3409903_P261T_H3K27me3.sga	PC primary tumor P261T|H3K27me3|Case	H3K27me3	GSM3409903
263	GSM3409904_P431T_H3K27me3.sga	PC primary tumor P431T|H3K27me3|Case	H3K27me3	GSM3409904
264	GSM3409905_P444T_H3K27me3.sga	PC primary tumor P444T|H3K27me3|Control	H3K27me3	GSM3409905
265	GSM3409906_P456T_H3K27me3.sga	PC primary tumor P456T|H3K27me3|Control	H3K27me3	GSM3409906
266	GSM3409907_P457T_H3K27me3.sga	PC primary tumor P457T|H3K27me3|Control	H3K27me3	GSM3409907
267	GSM3409908_P301T_H3K27me3.sga	PC primary tumor P301T|H3K27me3|Case	H3K27me3	GSM3409908
268	GSM3409909_P324T_H3K27me3.sga	PC primary tumor P324T|H3K27me3|Control	H3K27me3	GSM3409909
269	GSM3409910_P328T_H3K27me3.sga	PC primary tumor P328T|H3K27me3|Control	H3K27me3	GSM3409910
270	GSM3409911_P343T_H3K27me3.sga	PC primary tumor P343T|H3K27me3|Case	H3K27me3	GSM3409911
271	GSM3409912_P349T_H3K27me3.sga	PC primary tumor P349T|H3K27me3|Control	H3K27me3	GSM3409912
272	GSM3409913_P823T_H3K27me3.sga	PC primary tumor P823T|H3K27me3|Case	H3K27me3	GSM3409913
273	GSM3409914_P305T_H3K27me3.sga	PC primary tumor P305T|H3K27me3|Control	H3K27me3	GSM3409914
274	GSM3409915_P300T_H3K27me3.sga	PC primary tumor P300T|H3K27me3|Control	H3K27me3	GSM3409915
275	GSM3409916_P450T_H3K27me3.sga	PC primary tumor P450T|H3K27me3|Case	H3K27me3	GSM3409916
276	GSM3409917_P506T_H3K27me3.sga	PC primary tumor P506T|H3K27me3|Case	H3K27me3	GSM3409917
277	GSM3409918_P310T_H3K27me3.sga	PC primary tumor P310T|H3K27me3|Case	H3K27me3	GSM3409918
278	GSM3409919_P309T_H3K27me3.sga	PC primary tumor P309T|H3K27me3|Case	H3K27me3	GSM3409919
279	GSM3409920_P268T_H3K27me3.sga	PC primary tumor P268T|H3K27me3|Case	H3K27me3	GSM3409920
280	GSM3409921_P536T_H3K27me3.sga	PC primary tumor P536T|H3K27me3|Case	H3K27me3	GSM3409921
281	GSM3409922_P643T_H3K27me3.sga	PC primary tumor P643T|H3K27me3|Case	H3K27me3	GSM3409922
282	GSM3409923_P717T_H3K27me3.sga	PC primary tumor P717T|H3K27me3|Case	H3K27me3	GSM3409923
283	GSM3409924_P737T_H3K27me3.sga	PC primary tumor P737T|H3K27me3|Case	H3K27me3	GSM3409924
284	GSM3409925_P747T_H3K27me3.sga	PC primary tumor P747T|H3K27me3|Control	H3K27me3	GSM3409925
285	GSM3409926_P779T_H3K27me3.sga	PC primary tumor P779T|H3K27me3|Control	H3K27me3	GSM3409926
286	GSM3409927_P832T_H3K27me3.sga	PC primary tumor P832T|H3K27me3|Control	H3K27me3	GSM3409927
287	GSM3409928_P452T_H3K27me3.sga	PC primary tumor P452T|H3K27me3|Case	H3K27me3	GSM3409928
288	GSM3409929_P464T_H3K27me3.sga	PC primary tumor P464T|H3K27me3|Case	H3K27me3	GSM3409929
289	GSM3409930_P531T_H3K27me3.sga	PC primary tumor P531T|H3K27me3|Case	H3K27me3	GSM3409930
290	GSM3409931_P559T_H3K27me3.sga	PC primary tumor P559T|H3K27me3|Case	H3K27me3	GSM3409931
291	GSM3409932_P560T_H3K27me3.sga	PC primary tumor P560T|H3K27me3|Control	H3K27me3	GSM3409932
292	GSM3409933_P593T_H3K27me3.sga	PC primary tumor P593T|H3K27me3|Control	H3K27me3	GSM3409933
293	GSM3409934_P603T_H3K27me3.sga	PC primary tumor P603T|H3K27me3|Control	H3K27me3	GSM3409934
294	GSM3409935_P555T_H3K27me3.sga	PC primary tumor P555T|H3K27me3|Control	H3K27me3	GSM3409935
295	GSM3409936_P660T_H3K27me3.sga	PC primary tumor P660T|H3K27me3|Control	H3K27me3	GSM3409936
296	GSM3409937_P265T_H3K27me3.sga	PC primary tumor P265T|H3K27me3|Case	H3K27me3	GSM3409937
297	GSM3409938_P294T_H3K27me3.sga	PC primary tumor P294T|H3K27me3|Case	H3K27me3	GSM3409938
298	GSM3409939_P355T_H3K27me3.sga	PC primary tumor P355T|H3K27me3|Case	H3K27me3	GSM3409939
299	GSM3409940_P544T_H3K27me3.sga	PC primary tumor P544T|H3K27me3|Control	H3K27me3	GSM3409940
300	GSM3409941_P680T_H3K27me3.sga	PC primary tumor P680T|H3K27me3|Control	H3K27me3	GSM3409941
301	GSM3409942_P695T_H3K27me3.sga	PC primary tumor P695T|H3K27me3|Control	H3K27me3	GSM3409942
302	GSM3409944_P230T_H3K27me3.sga	PC primary tumor P230T|H3K27me3|Case	H3K27me3	GSM3409944
303	GSM3409945_P249T_H3K27me3.sga	PC primary tumor P249T|H3K27me3|Control	H3K27me3	GSM3409945
304	GSM3409947_P254T_H3K27me3.sga	PC primary tumor P254T|H3K27me3|Exclude	H3K27me3	GSM3409947
305	GSM3409950_P263T_H3K27me3.sga	PC primary tumor P263T|H3K27me3|Control	H3K27me3	GSM3409950
306	GSM3409952_P272T_H3K27me3.sga	PC primary tumor P272T|H3K27me3|Control	H3K27me3	GSM3409952
307	GSM3409954_P274T_H3K27me3.sga	PC primary tumor P274T|H3K27me3|Case	H3K27me3	GSM3409954
308	GSM3409955_P279T_H3K27me3.sga	PC primary tumor P279T|H3K27me3|Control	H3K27me3	GSM3409955
309	GSM3409956_P280T_H3K27me3.sga	PC primary tumor P280T|H3K27me3|Control	H3K27me3	GSM3409956
310	GSM3409957_P291T_H3K27me3.sga	PC primary tumor P291T|H3K27me3|Exclude	H3K27me3	GSM3409957
311	GSM3409958_P295T_H3K27me3.sga	PC primary tumor P295T|H3K27me3|Case	H3K27me3	GSM3409958
312	GSM3409959_P336T_H3K27me3.sga	PC primary tumor P336T|H3K27me3|Control	H3K27me3	GSM3409959

Notes on samples nomenclature:

Abbreviations: PC = prostate cancer. The case/control status of patients is given in the third field of the sample description (usually used for specifying the condition or treatment of the sample). "Exclude" means that no follow-up data were abaible for this particular patient (see above).

Merged samples:

None.

FASTQ files were extracted from SRA files using fastq-dump (SRA toolkit v2.5.0) and mapped to the genome using Bowtie2 v2.3.4.2. SAM files were then converted to BAM using samtools v1.9 and to BED using bamToBed v2.27.0 (bedtools). BED to SGA conversion was carried out using bed2sga (ChIP-Seq v. 1.5.3).

• Stelloo S, Nevedomskaya E, Kim Y, Schuurman K, Valle-Encinas E, Lobo J, Krijgsman O, Peeper DS, Chang SL, Feng FY, Wessels LFA, Henrique R, Jerónimo C, Bergman AM, Zwart W. Integrative epigenetic taxonomy of primary prostate cancer. Nat Commun. 2018 Nov 21;9(1):4900. doi: 10.1038/s41467-018-07270-2. 30464211
• GEO series GSE120738: Integrative epigenetic taxonomy of primary prostate cancer [ChIP-Seq]