SwissRegulon, database of genome-wide annotations of regulatory sites.

SwissRegulon annotation of Transcription Start Sites and Transcription Start Clusters generated with FANTOM4 CAGE data.

• Raw data was downloaded from: Swissregulon
• Input file format: GFF
• Download date: 26-9-2016

From H. sapiens (Feb 2009 GRCh37/hg19).

Genome Annotation:

	Filename	Description	Feature	GEO-ID
1	promoters_hg19.sga	Promoters	TSS	-
2	hg19_TSC_v1.sga	Transcription Start Clusters	TSC	-
3	tss_clusters_level3_hg19.sga	Promoters regions	TSS	-

GFF files were converted in SGA. TSS were mapped to the 'Representative position' of the transcription start region. The files promoters_hg19.sga and tss_clusters_level3_hg19.sga are LiftedOver from hg18.

• Pachkov M, Balwierz PJ, Arnold P, Ozonov E, van Nimwegen E
  SwissRegulon, a database of genome-wide annotations of regulatory sites: recent updates. Nucleic Acids Res. 2013 Jan;41(Database issue):D214-20. doi: 10.1093/nar/gks1145. Epub 2012 Nov 24. 23180783