Wang 2011, Notch1 and RBPJ binding in human and murine T-lymphoblastic leukemia cells.


This serie has data from Notch1, RBPJ and ZNF143 binding and several histone modifications in Notch1-dependent human TLL (T-Lymphoblastic Leukemia) cell line CUTLL1.



From H. sapiens (Feb 2009 GRCh37/hg19).

ChIP-seq data:

Filename Description Feature GEO-ID
1 GSM732903.sga CUTLL1|Notch1||rep1 Notch1 GSM732903
2 GSM732904.sga CUTLL1|Notch1||rep2 Notch1 GSM732904
3 GSM732905.sga CUTLL1|RBPJ||rep1 RBPJ GSM732905
4 GSM732906.sga CUTLL1|RBPJ||rep2 RBPJ GSM732906
5 GSM732907.sga CUTLL1|ZNF143 ZNF143 GSM732907
6 GSM732908.sga CUTLL1|input||rep1 input GSM732908
7 GSM732909.sga CUTLL1|input||rep2 input GSM732909
8 GSM732910.sga CUTLL1|H3K4me1 H3K4me1 GSM732910
9 GSM732911.sga CUTLL1|H3K4me3 H3K4me3 GSM732911
10 GSM732912.sga CUTLL1|H3K27me3 H3K27me3 GSM732912

Technical Notes

FASTQ files were extracted from SRA files using fastq-dump (SRA toolkit v2.5.0) and mapped to the hg19 genome using Bowtie2 version 2.2.9. SAM files were then converted into bam using samtools v0.1.14 and to bed using bamToBed v2.12.0 (bedtools). SGA conversion was carried out using (ChIP-Seq v. 1.5.3).


Last update: 1 Oct 2018